BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3670899.2.1
         (555 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN816210.1|CN816210  HRO4518_B09_C18ZS5 Lib AA071E1X Aven...    34   0.13 
gb|CN816994.1|CN816994  HRO4527_B01_D01ZS5 Lib AA071E1X Aven...    32   0.50 

>gb|CN816210.1|CN816210 HRO4518_B09_C18ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4518_B09_C18, mRNA sequence
          Length = 760

 Score = 34.2 bits (17), Expect = 0.13
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 28  cgcttaaacgaatacaa 44
           |||||||||||||||||
Sbjct: 576 cgcttaaacgaatacaa 592



>gb|CN816994.1|CN816994 HRO4527_B01_D01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4527_B01_D01, mRNA sequence
          Length = 313

 Score = 32.2 bits (16), Expect = 0.50
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 460 tgtactgctgctgctc 475
           ||||||||||||||||
Sbjct: 170 tgtactgctgctgctc 185



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 969
Number of Sequences: 8143
Number of extensions: 969
Number of successful extensions: 236
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 234
Number of HSP's gapped (non-prelim): 2
length of query: 555
length of database: 4,702,463
effective HSP length: 16
effective length of query: 539
effective length of database: 4,572,175
effective search space: 2464402325
effective search space used: 2464402325
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)