BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478075.2.1
(807 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY277385.1| Avena sativa 1,3-beta glucanase (Oglc13) gen... 84 2e-016
gb|AF155932.1| Avena sativa 1,3-beta glucanase (Oglc13) mRN... 68 1e-011
emb|Z15131.1|ASBGLUCAN A.sativa mRNA for beta glucanase 58 1e-008
gb|CN815155.1|CN815155 HRO4506_E03_I06ZS5 Lib AA071E1X Aven... 54 2e-007
gb|CN821029.1|CN821029 HRO4422_G03_M06ZS5 Lib AA069E1X Aven... 42 8e-004
>gb|AY277385.1| Avena sativa 1,3-beta glucanase (Oglc13) gene, complete cds
Length = 3281
Score = 83.8 bits (42), Expect = 2e-016
Identities = 87/102 (85%)
Strand = Plus / Plus
Query: 263 gtacactaacatgttcgacgcgatcgtggacgcgacgcacgcggcggtggagaaggccgg 322
|||||| ||| ||||||||||||| ||||||||| |||||||||| |||||||||| ||
Sbjct: 2845 gtacacgaacctgttcgacgcgatggtggacgcggtgcacgcggcgctggagaaggcggg 2904
Query: 323 ggtgcaggggctggagctggtggtgtcggagaccggctggcc 364
|| || ||| || || ||||||||||||||| ||| |||||
Sbjct: 2905 ggcgccgggcgtgaaggtggtggtgtcggagagcgggtggcc 2946
>gb|AF155932.1| Avena sativa 1,3-beta glucanase (Oglc13) mRNA, partial cds
Length = 1045
Score = 67.9 bits (34), Expect = 1e-011
Identities = 85/102 (83%)
Strand = Plus / Plus
Query: 264 tacactaacatgttcgacgcgatcgtggacgcgacgcacgcggcggtggagaaggccggg 323
||||| ||| ||||||||||||| ||||||||| |||||||||| |||||||||| |||
Sbjct: 601 tacacgaacctgttcgacgcgatggtggacgcggtgcacgcggcgctggagaaggcgggg 660
Query: 324 gtgcaggggctggagctggtggtgtcggagaccggctggccg 365
| | | | || || ||||||||||||||| ||| ||||||
Sbjct: 661 gcggcgagcgtgaaggtggtggtgtcggagagcgggtggccg 702
Score = 48.1 bits (24), Expect = 1e-005
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 468 ctggagacctacctgttcgccatgttcaacgagaac 503
|||||||| ||| |||||||||||||| ||||||||
Sbjct: 802 ctggagacgtacgtgttcgccatgttcgacgagaac 837
>emb|Z15131.1|ASBGLUCAN A.sativa mRNA for beta glucanase
Length = 1448
Score = 58.0 bits (29), Expect = 1e-008
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 471 gagacctacctgttcgccatgttcaacgagaacggcaaggccgagggcgtggagcag 527
||||||||| ||||||||||||||||||||||| |||| | | ||||||||||||
Sbjct: 922 gagacctacgtgttcgccatgttcaacgagaaccagaaggacaacggcgtggagcag 978
Score = 58.0 bits (29), Expect = 1e-008
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 337 agctggtggtgtcggagaccggctggccgtcggccggcggcgagg 381
||||||||||||| |||| || ||||||||||||||||||||||
Sbjct: 791 agctggtggtgtccgagagtgggtggccgtcggccggcggcgagg 835
>gb|CN815155.1|CN815155 HRO4506_E03_I06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_E03_I06, mRNA sequence
Length = 333
Score = 54.0 bits (27), Expect = 2e-007
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 471 gagacctacctgttcgccatgttcaacgagaacggcaag 509
||||| ||| ||||||||||||||||||||||| |||||
Sbjct: 40 gagacatacgtgttcgccatgttcaacgagaacagcaag 78
>gb|CN821029.1|CN821029 HRO4422_G03_M06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_G03_M06, mRNA
sequence
Length = 508
Score = 42.1 bits (21), Expect = 8e-004
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 483 ttcgccatgttcaacgagaac 503
|||||||||||||||||||||
Sbjct: 255 ttcgccatgttcaacgagaac 275
Score = 34.2 bits (17), Expect = 0.18
Identities = 29/33 (87%)
Strand = Plus / Plus
Query: 345 gtgtcggagaccggctggccgtcggccggcggc 377
||||| |||| ||| ||||| ||||||||||||
Sbjct: 120 gtgtccgagagcgggtggccctcggccggcggc 152
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1772
Number of Sequences: 8143
Number of extensions: 1772
Number of successful extensions: 468
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 456
Number of HSP's gapped (non-prelim): 12
length of query: 807
length of database: 4,702,463
effective HSP length: 16
effective length of query: 791
effective length of database: 4,572,175
effective search space: 3616590425
effective search space used: 3616590425
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)