BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2455820.2.1
(1312 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN816483.1|CN816483 HRO4521_C06_E11ZS5 Lib AA071E1X Aven... 64 3e-010
gb|CN820984.1|CN820984 HRO4422_B12_C24ZS5 Lib AA069E1X Aven... 36 0.076
gb|CN814705.1|CN814705 HRO4501_F02_K03ZS5 Lib AA071E1X Aven... 34 0.30
gb|CN815072.1|CN815072 HRO4505_E09_I17ZS5 Lib AA071E1X Aven... 34 0.30
gb|CN816762.1|CN816762 HRO4524_E03_J06ZS5 Lib AA071E1X Aven... 34 0.30
gb|CN820684.1|CN820684 HRO4416_C12_F24ZS5 Lib AA069E1X Aven... 34 0.30
gb|CN820717.1|CN820717 HRO4416_G05_N10ZS5 Lib AA069E1X Aven... 34 0.30
gb|CN821556.1|CN821556 HRO4426_F09_K18ZS5 Lib AA069E1X Aven... 34 0.30
>gb|CN816483.1|CN816483 HRO4521_C06_E11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4521_C06_E11, mRNA sequence
Length = 356
Score = 63.9 bits (32), Expect = 3e-010
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 369 cttgcgataatccttgtccgtgccgaacaaccagtccatgtaaacaaa 416
|||||| ||| |||| |||||||| |||||||||||||||||||||||
Sbjct: 54 cttgcggtaacccttatccgtgccaaacaaccagtccatgtaaacaaa 7
>gb|CN820984.1|CN820984 HRO4422_B12_C24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_B12_C24, mRNA
sequence
Length = 551
Score = 36.2 bits (18), Expect = 0.076
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 454 cggtgatggtagtcatgg 471
||||||||||||||||||
Sbjct: 65 cggtgatggtagtcatgg 48
>gb|CN814705.1|CN814705 HRO4501_F02_K03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_F02_K03, mRNA sequence
Length = 641
Score = 34.2 bits (17), Expect = 0.30
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 315 agcagcttccacaatct 331
|||||||||||||||||
Sbjct: 434 agcagcttccacaatct 450
>gb|CN815072.1|CN815072 HRO4505_E09_I17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4505_E09_I17, mRNA sequence
Length = 451
Score = 34.2 bits (17), Expect = 0.30
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1192 tgagcctggcctgcgac 1208
|||||||||||||||||
Sbjct: 65 tgagcctggcctgcgac 49
>gb|CN816762.1|CN816762 HRO4524_E03_J06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4524_E03_J06, mRNA sequence
Length = 742
Score = 34.2 bits (17), Expect = 0.30
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 206 gaaatcaatatctcaac 222
|||||||||||||||||
Sbjct: 719 gaaatcaatatctcaac 735
>gb|CN820684.1|CN820684 HRO4416_C12_F24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4416_C12_F24, mRNA
sequence
Length = 437
Score = 34.2 bits (17), Expect = 0.30
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 965 tcttgtacttggcgaag 981
|||||||||||||||||
Sbjct: 32 tcttgtacttggcgaag 16
>gb|CN820717.1|CN820717 HRO4416_G05_N10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4416_G05_N10, mRNA
sequence
Length = 644
Score = 34.2 bits (17), Expect = 0.30
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 965 tcttgtacttggcgaag 981
|||||||||||||||||
Sbjct: 359 tcttgtacttggcgaag 375
>gb|CN821556.1|CN821556 HRO4426_F09_K18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_F09_K18, mRNA
sequence
Length = 451
Score = 34.2 bits (17), Expect = 0.30
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 1156 cggcggcgaagatgccgagga 1176
||||||||| |||||||||||
Sbjct: 88 cggcggcgacgatgccgagga 68
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3526
Number of Sequences: 8143
Number of extensions: 3526
Number of successful extensions: 1028
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1020
Number of HSP's gapped (non-prelim): 8
length of query: 1312
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1296
effective length of database: 4,572,175
effective search space: 5925538800
effective search space used: 5925538800
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)