BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441373.2.3
(986 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN819658.1|CN819658 HRO4402_F10_K20ZS5 Lib AA069E1X Aven... 575 e-164
gb|CN821338.1|CN821338 HRO4424_B10_D20ZS5 Lib AA069E1X Aven... 456 e-128
gb|CN817732.1|CN817732 HRO4459_A03_A05ZS5 Lib AA070E1X Aven... 418 e-117
gb|CN815204.1|CN815204 HRO4507_A08_B15ZS5 Lib AA071E1X Aven... 416 e-116
gb|CN817405.1|CN817405 HRO4465_F08_L15ZS5 Lib AA070E1X Aven... 416 e-116
gb|CN820359.1|CN820359 HRO4418_E01_I02ZS5 Lib AA069E1X Aven... 402 e-112
gb|CN816698.1|CN816698 HRO4523_G03_N05ZS5 Lib AA071E1X Aven... 400 e-112
gb|CN815267.1|CN815267 HRO4507_G08_N15ZS5 Lib AA071E1X Aven... 398 e-111
gb|CN816930.1|CN816930 HRO4526_D03_G06ZS5 Lib AA071E1X Aven... 383 e-106
gb|CN821473.1|CN821473 HRO4425_G03_M05ZS5 Lib AA069E1X Aven... 363 e-100
gb|CN821431.1|CN821431 HRO4425_C04_E07ZS5 Lib AA069E1X Aven... 359 3e-099
gb|CN815452.1|CN815452 HRO4509_G12_M23ZS5 Lib AA071E1X Aven... 283 1e-076
gb|CN815265.1|CN815265 HRO4507_G06_N11ZS5 Lib AA071E1X Aven... 274 1e-073
gb|CN815294.1|CN815294 HRO4508_B02_D04ZS5 Lib AA071E1X Aven... 218 7e-057
gb|CN819745.1|CN819745 HRO4403_F05_L09ZS5 Lib AA069E1X Aven... 208 7e-054
gb|CN820154.1|CN820154 HRO4411_G07_N13ZS5 Lib AA069E1X Aven... 174 1e-043
gb|CN814693.1|CN814693 HRO4501_E02_I03ZS5 Lib AA071E1X Aven... 165 9e-041
gb|BE439283.1|BE439283 CDO64_WHE04F12F ITEC CDO Oat cDNA Li... 143 3e-034
gb|CN815915.1|CN815915 HRO4511_H05_P09ZS5 Lib AA071E1X Aven... 113 3e-025
gb|CN818107.1|CN818107 HRO4471_G09_M17ZS5 Lib AA070E1X Aven... 101 1e-021
>gb|CN819658.1|CN819658 HRO4402_F10_K20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_F10_K20, mRNA
sequence
Length = 758
Score = 575 bits (290), Expect = e-164
Identities = 413/454 (90%)
Strand = Plus / Plus
Query: 208 ccatggcggaccaactcaccgacgaccagatcgccgagttcaaggaggccttcagcctct 267
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 102 ccatggcggatcagctcaccgacgaccagatcgccgagttcaaggaggccttcagcctgt 161
Query: 268 tcgacaaggacggggatggttgcatcacgaccaaggagctgggaactgtcatgcgttcac 327
||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 162 tcgacaaggacggagatggttgcatcacaaccaaggagctgggaacggtcatgcgttcac 221
Query: 328 tggggcaaaaccctacagaggctgagctccaggacatgatcaatgaggtcgatgccgatg 387
||||||| ||||| || |||||||||||||||||||||||||| || |||||||| ||||
Sbjct: 222 tggggcagaacccaacggaggctgagctccaggacatgatcaacgaagtcgatgctgatg 281
Query: 388 gcaacggcaccatcgattttccagagtttctgaaccttatggctcgcaagatgaaggaca 447
|||| || ||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 282 gcaatggaaccattgatttcccagagtttctcaacctgatggctcgcaagatgaaggaca 341
Query: 448 ccgactctgaggaagagctcaaggaggcctttcgtgtgtttgacaaggaccagaacggct 507
| ||||| |||||||||||||||||||||| | ||||| ||||||||||| || ||||
Sbjct: 342 ctgactcaaaggaagagctcaaggaggccttcagggtgttcgacaaggaccaaaatggct 401
Query: 508 tcatctccgccgccgagctccgccatgtcatgacaaatcttggggagaagctaactgatg 567
||||||| || || ||||||||||| ||||||||||| ||||| ||||||||||| || |
Sbjct: 402 tcatctctgctgctgagctccgccacgtcatgacaaaccttggcgagaagctaaccgacg 461
Query: 568 aggaggtagacgagatgatccgtgaggctgatgtcgatggtgatggccagattaactacg 627
||||||| ||||||||||||||||| |||||||| ||||||||||||||||| |||||||
Sbjct: 462 aggaggtcgacgagatgatccgtgaagctgatgttgatggtgatggccagatcaactacg 521
Query: 628 aggagtttgttaaggtcatgatggccaagtgagc 661
|||||||||| ||||||||||||||||| |||||
Sbjct: 522 aggagtttgtcaaggtcatgatggccaaatgagc 555
>gb|CN821338.1|CN821338 HRO4424_B10_D20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_B10_D20, mRNA
sequence
Length = 643
Score = 456 bits (230), Expect = e-128
Identities = 344/382 (90%)
Strand = Plus / Plus
Query: 280 gggatggttgcatcacgaccaaggagctgggaactgtcatgcgttcactggggcaaaacc 339
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 9 gggatggttgcatcacaaccaaggagctgggaacagtcatgcgttcactggggcagaacc 68
Query: 340 ctacagaggctgagctccaggacatgatcaatgaggtcgatgccgatggcaacggcacca 399
| || ||||||||||||||||||||||||||||| || || || |||||||| |||||||
Sbjct: 69 caacggaggctgagctccaggacatgatcaatgaagttgacgctgatggcaatggcacca 128
Query: 400 tcgattttccagagtttctgaaccttatggctcgcaagatgaaggacaccgactctgagg 459
| ||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||
Sbjct: 129 ttgatttcccagagtttctcaacctgatggctcgcaagatgaaggacactgactcagagg 188
Query: 460 aagagctcaaggaggcctttcgtgtgtttgacaaggaccagaacggcttcatctccgccg 519
||||||||||||||||||| | ||||| ||||||||||| || ||||||||||| || |
Sbjct: 189 aagagctcaaggaggccttcagggtgttcgacaaggaccaaaatggcttcatctctgctg 248
Query: 520 ccgagctccgccatgtcatgacaaatcttggggagaagctaactgatgaggaggtagacg 579
| ||||||||||||||||||||||| ||||| ||||||||||| || |||||||| ||||
Sbjct: 249 ctgagctccgccatgtcatgacaaaccttggcgagaagctaaccgacgaggaggttgacg 308
Query: 580 agatgatccgtgaggctgatgtcgatggtgatggccagattaactacgaggagtttgtta 639
||||||||||||| |||||||| || || ||||||||||| ||||||||||| ||||| |
Sbjct: 309 agatgatccgtgaagctgatgttgacggcgatggccagatcaactacgaggaatttgtca 368
Query: 640 aggtcatgatggccaagtgagc 661
|||||||||||||||| |||||
Sbjct: 369 aggtcatgatggccaaatgagc 390
Score = 40.1 bits (20), Expect = 0.004
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 247 tcaaggaggccttcagcctcttcgacaaggac 278
|||||||||||||||| | ||||||||||||
Sbjct: 195 tcaaggaggccttcagggtgttcgacaaggac 226
>gb|CN817732.1|CN817732 HRO4459_A03_A05ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4459_A03_A05, mRNA sequence
Length = 629
Score = 418 bits (211), Expect = e-117
Identities = 310/343 (90%)
Strand = Plus / Plus
Query: 319 tgcgttcactggggcaaaaccctacagaggctgagctccaggacatgatcaatgaggtcg 378
|||| ||||||||||| ||||| || ||||||||||||||||||||||||||||| ||||
Sbjct: 12 tgcgctcactggggcagaacccaacggaggctgagctccaggacatgatcaatgaagtcg 71
Query: 379 atgccgatggcaacggcaccatcgattttccagagtttctgaaccttatggctcgcaaga 438
| || |||||||| |||||||| ||||| ||||||||||| ||||| |||||||||||||
Sbjct: 72 acgctgatggcaatggcaccattgatttcccagagtttctcaacctgatggctcgcaaga 131
Query: 439 tgaaggacaccgactctgaggaagagctcaaggaggcctttcgtgtgtttgacaaggacc 498
|||||||||| ||||| ||||||||||||||||||||||| | ||||| ||||||||||
Sbjct: 132 tgaaggacactgactcggaggaagagctcaaggaggccttcagggtgttcgacaaggacc 191
Query: 499 agaacggcttcatctccgccgccgagctccgccatgtcatgacaaatcttggggagaagc 558
| |||||||||||||| || |||||||||||||| ||||||||||| ||||| |||||||
Sbjct: 192 aaaacggcttcatctctgctgccgagctccgccacgtcatgacaaaccttggcgagaagc 251
Query: 559 taactgatgaggaggtagacgagatgatccgtgaggctgatgtcgatggtgatggccaga 618
|||| || |||||||| ||||||||||||||||| |||||||| || |||||||||||||
Sbjct: 252 taaccgacgaggaggtcgacgagatgatccgtgaagctgatgttgacggtgatggccaga 311
Query: 619 ttaactacgaggagtttgttaaggtcatgatggccaagtgagc 661
| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 312 tcaactacgaggagtttgtcaaggtcatgatggccaaatgagc 354
Score = 40.1 bits (20), Expect = 0.004
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 247 tcaaggaggccttcagcctcttcgacaaggac 278
|||||||||||||||| | ||||||||||||
Sbjct: 159 tcaaggaggccttcagggtgttcgacaaggac 190
>gb|CN815204.1|CN815204 HRO4507_A08_B15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4507_A08_B15, mRNA sequence
Length = 568
Score = 416 bits (210), Expect = e-116
Identities = 321/358 (89%)
Strand = Plus / Plus
Query: 304 agctgggaactgtcatgcgttcactggggcaaaaccctacagaggctgagctccaggaca 363
|||||||||| |||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct: 1 agctgggaacagtcatgcgttcactggggcagaacccaacggaggctgagctccaggaca 60
Query: 364 tgatcaatgaggtcgatgccgatggcaacggcaccatcgattttccagagtttctgaacc 423
|||||||||| || || || |||||||| |||||||| ||||| ||||||||||| ||||
Sbjct: 61 tgatcaatgaagttgacgctgatggcaatggcaccattgatttcccagagtttctcaacc 120
Query: 424 ttatggctcgcaagatgaaggacaccgactctgaggaagagctcaaggaggcctttcgtg 483
| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| | |
Sbjct: 121 tgatggctcgcaagatgaaggacactgactcagaggaagagctcaaggaggccttcaggg 180
Query: 484 tgtttgacaaggaccagaacggcttcatctccgccgccgagctccgccatgtcatgacaa 543
|||| ||||||||||| || ||||||||||| || || ||||||||||||||||||||||
Sbjct: 181 tgttcgacaaggaccaaaatggcttcatctctgctgctgagctccgccatgtcatgacaa 240
Query: 544 atcttggggagaagctaactgatgaggaggtagacgagatgatccgtgaggctgatgtcg 603
| ||||| ||||||||||| || |||||||| ||||||||||||||||| |||||||| |
Sbjct: 241 accttggcgagaagctaaccgacgaggaggttgacgagatgatccgtgaagctgatgttg 300
Query: 604 atggtgatggccagattaactacgaggagtttgttaaggtcatgatggccaagtgagc 661
| || ||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||
Sbjct: 301 acggcgatggccagatcaactacgaggaatttgtcaaggtcatgatggccaaatgagc 358
Score = 40.1 bits (20), Expect = 0.004
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 247 tcaaggaggccttcagcctcttcgacaaggac 278
|||||||||||||||| | ||||||||||||
Sbjct: 163 tcaaggaggccttcagggtgttcgacaaggac 194
>gb|CN817405.1|CN817405 HRO4465_F08_L15ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4465_F08_L15, mRNA sequence
Length = 646
Score = 416 bits (210), Expect = e-116
Identities = 306/338 (90%)
Strand = Plus / Plus
Query: 324 tcactggggcaaaaccctacagaggctgagctccaggacatgatcaatgaggtcgatgcc 383
||||||||||| ||||| || ||||||||||||||||||||||||||||| ||||| ||
Sbjct: 15 tcactggggcagaacccaacggaggctgagctccaggacatgatcaatgaagtcgacgct 74
Query: 384 gatggcaacggcaccatcgattttccagagtttctgaaccttatggctcgcaagatgaag 443
|||||||| |||||||| ||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct: 75 gatggcaatggcaccattgatttcccagagtttctcaacctgatggctcgcaagatgaag 134
Query: 444 gacaccgactctgaggaagagctcaaggaggcctttcgtgtgtttgacaaggaccagaac 503
||||| ||||| ||||||||||||||||||||||| | ||||| ||||||||||| |||
Sbjct: 135 gacactgactcggaggaagagctcaaggaggccttcagggtgttcgacaaggaccaaaac 194
Query: 504 ggcttcatctccgccgccgagctccgccatgtcatgacaaatcttggggagaagctaact 563
||||||||||| || |||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct: 195 ggcttcatctctgctgccgagctccgccacgtcatgacaaaccttggcgagaagctaacc 254
Query: 564 gatgaggaggtagacgagatgatccgtgaggctgatgtcgatggtgatggccagattaac 623
|| |||||||| ||||||||||||||||| |||||||| || |||||||||||||| |||
Sbjct: 255 gacgaggaggtcgacgagatgatccgtgaagctgatgttgacggtgatggccagatcaac 314
Query: 624 tacgaggagtttgttaaggtcatgatggccaagtgagc 661
|||||||||||||| ||||||||||||||||| |||||
Sbjct: 315 tacgaggagtttgtcaaggtcatgatggccaaatgagc 352
Score = 40.1 bits (20), Expect = 0.004
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 247 tcaaggaggccttcagcctcttcgacaaggac 278
|||||||||||||||| | ||||||||||||
Sbjct: 157 tcaaggaggccttcagggtgttcgacaaggac 188
>gb|CN820359.1|CN820359 HRO4418_E01_I02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_E01_I02, mRNA
sequence
Length = 446
Score = 402 bits (203), Expect = e-112
Identities = 311/347 (89%)
Strand = Plus / Plus
Query: 315 gtcatgcgttcactggggcaaaaccctacagaggctgagctccaggacatgatcaatgag 374
|||||||| ||||||||||| ||| || |||||||||||||||||||| ||||||||
Sbjct: 1 gtcatgcgctcactggggcatttcccaacggaggctgagctccaggacattatcaatgaa 60
Query: 375 gtcgatgccgatggcaacggcaccatcgattttccagagtttctgaaccttatggctcgc 434
||||| || |||||||| |||||||| ||||| ||||||||||| ||||| |||||||||
Sbjct: 61 gtcgacgctgatggcaatggcaccattgatttcccagagtttctcaacctgatggctcgc 120
Query: 435 aagatgaaggacaccgactctgaggaagagctcaaggaggcctttcgtgtgtttgacaag 494
|||||||||||||| ||||| ||||||||||||||||||||||| | ||||| ||||||
Sbjct: 121 aagatgaaggacactgactcggaggaagagctcaaggaggccttcagggtgttcgacaag 180
Query: 495 gaccagaacggcttcatctccgccgccgagctccgccatgtcatgacaaatcttggggag 554
||||| |||||||||||||| || |||||||||||||| ||||||||||| ||||| |||
Sbjct: 181 gaccaaaacggcttcatctctgctgccgagctccgccacgtcatgacaaaccttggcgag 240
Query: 555 aagctaactgatgaggaggtagacgagatgatccgtgaggctgatgtcgatggtgatggc 614
|||||||| || |||||||| ||||||||||||||||| |||||||| || |||||||||
Sbjct: 241 aagctaaccgacgaggaggtcgacgagatgatccgtgaagctgatgttgacggtgatggc 300
Query: 615 cagattaactacgaggagtttgttaaggtcatgatggccaagtgagc 661
||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 301 cagatcaactacgaggagtttgtcaaggtcatgatggccaaatgagc 347
Score = 40.1 bits (20), Expect = 0.004
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 247 tcaaggaggccttcagcctcttcgacaaggac 278
|||||||||||||||| | ||||||||||||
Sbjct: 152 tcaaggaggccttcagggtgttcgacaaggac 183
>gb|CN816698.1|CN816698 HRO4523_G03_N05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4523_G03_N05, mRNA sequence
Length = 608
Score = 400 bits (202), Expect = e-112
Identities = 295/326 (90%)
Strand = Plus / Plus
Query: 336 aaccctacagaggctgagctccaggacatgatcaatgaggtcgatgccgatggcaacggc 395
||||| || ||||||||||||||||||||||||||||| ||||| || |||||||| |||
Sbjct: 1 aacccaacggaggctgagctccaggacatgatcaatgaagtcgacgctgatggcaatggc 60
Query: 396 accatcgattttccagagtttctgaaccttatggctcgcaagatgaaggacaccgactct 455
||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct: 61 accattgatttcccagagtttctcaacctgatggctcgcaagatgaaggacactgactcg 120
Query: 456 gaggaagagctcaaggaggcctttcgtgtgtttgacaaggaccagaacggcttcatctcc 515
||||||||||||||||||||||| | ||||| ||||||||||| ||||||||||||||
Sbjct: 121 gaggaagagctcaaggaggccttcagggtgttcgacaaggaccaaaacggcttcatctct 180
Query: 516 gccgccgagctccgccatgtcatgacaaatcttggggagaagctaactgatgaggaggta 575
|| |||||||||||||| ||||||||||| ||||| ||||||||||| || ||||||||
Sbjct: 181 gctgccgagctccgccacgtcatgacaaaccttggcgagaagctaaccgacgaggaggtc 240
Query: 576 gacgagatgatccgtgaggctgatgtcgatggtgatggccagattaactacgaggagttt 635
||||||||||||||||| |||||||| || |||||||||||||| |||||||||||||||
Sbjct: 241 gacgagatgatccgtgaagctgatgttgacggtgatggccagatcaactacgaggagttt 300
Query: 636 gttaaggtcatgatggccaagtgagc 661
|| ||||||||||||||||| |||||
Sbjct: 301 gtcaaggtcatgatggccaaatgagc 326
Score = 40.1 bits (20), Expect = 0.004
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 247 tcaaggaggccttcagcctcttcgacaaggac 278
|||||||||||||||| | ||||||||||||
Sbjct: 131 tcaaggaggccttcagggtgttcgacaaggac 162
>gb|CN815267.1|CN815267 HRO4507_G08_N15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4507_G08_N15, mRNA sequence
Length = 622
Score = 398 bits (201), Expect = e-111
Identities = 288/317 (90%)
Strand = Plus / Plus
Query: 345 gaggctgagctccaggacatgatcaatgaggtcgatgccgatggcaacggcaccatcgat 404
||||||||||||||||||||||||||||| ||||| || |||||||| |||||||| |||
Sbjct: 18 gaggctgagctccaggacatgatcaatgaagtcgacgctgatggcaatggcaccattgat 77
Query: 405 tttccagagtttctgaaccttatggctcgcaagatgaaggacaccgactctgaggaagag 464
|| ||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct: 78 ttcccagagtttctcaacctgatggctcgcaagatgaaggacactgactcggaggaagag 137
Query: 465 ctcaaggaggcctttcgtgtgtttgacaaggaccagaacggcttcatctccgccgccgag 524
|||||||||||||| | ||||| ||||||||||| |||||||||||||| || ||||||
Sbjct: 138 ctcaaggaggccttcagggtgttcgacaaggaccaaaacggcttcatctctgctgccgag 197
Query: 525 ctccgccatgtcatgacaaatcttggggagaagctaactgatgaggaggtagacgagatg 584
|||||||| ||||||||||| ||||| ||||||||||| || |||||||| |||||||||
Sbjct: 198 ctccgccacgtcatgacaaaccttggcgagaagctaaccgacgaggaggtcgacgagatg 257
Query: 585 atccgtgaggctgatgtcgatggtgatggccagattaactacgaggagtttgttaaggtc 644
|||||||| |||||||| || |||||||||||||| ||||||||||||||||| ||||||
Sbjct: 258 atccgtgaagctgatgttgacggtgatggccagatcaactacgaggagtttgtcaaggtc 317
Query: 645 atgatggccaagtgagc 661
||||||||||| |||||
Sbjct: 318 atgatggccaaatgagc 334
Score = 40.1 bits (20), Expect = 0.004
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 247 tcaaggaggccttcagcctcttcgacaaggac 278
|||||||||||||||| | ||||||||||||
Sbjct: 139 tcaaggaggccttcagggtgttcgacaaggac 170
>gb|CN816930.1|CN816930 HRO4526_D03_G06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_D03_G06, mRNA sequence
Length = 624
Score = 383 bits (193), Expect = e-106
Identities = 286/317 (90%)
Strand = Plus / Plus
Query: 345 gaggctgagctccaggacatgatcaatgaggtcgatgccgatggcaacggcaccatcgat 404
|||||||||||||||||||||||||| || |||||||| |||||||| || ||||| |||
Sbjct: 23 gaggctgagctccaggacatgatcaacgaagtcgatgctgatggcaatggaaccattgat 82
Query: 405 tttccagagtttctgaaccttatggctcgcaagatgaaggacaccgactctgaggaagag 464
|| ||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct: 83 ttcccagagtttctcaacctgatggctcgcaagatgaaggacactgactcagaggaagag 142
Query: 465 ctcaaggaggcctttcgtgtgtttgacaaggaccagaacggcttcatctccgccgccgag 524
|||||||||||||| | ||||| ||||||||||| || ||||||||||| || || |||
Sbjct: 143 ctcaaggaggccttcagggtgttcgacaaggaccaaaatggcttcatctctgctgctgag 202
Query: 525 ctccgccatgtcatgacaaatcttggggagaagctaactgatgaggaggtagacgagatg 584
|||||||| ||||||||||| ||||| ||||||||||| || |||||||| |||||||||
Sbjct: 203 ctccgccacgtcatgacaaaccttggcgagaagctaaccgacgaggaggtcgacgagatg 262
Query: 585 atccgtgaggctgatgtcgatggtgatggccagattaactacgaggagtttgttaaggtc 644
|||||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 263 atccgtgaagctgatgttgatggtgatggccagatcaactacgaggagtttgtcaaggtc 322
Query: 645 atgatggccaagtgagc 661
||||||||||| |||||
Sbjct: 323 atgatggccaaatgagc 339
Score = 40.1 bits (20), Expect = 0.004
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 247 tcaaggaggccttcagcctcttcgacaaggac 278
|||||||||||||||| | ||||||||||||
Sbjct: 144 tcaaggaggccttcagggtgttcgacaaggac 175
>gb|CN821473.1|CN821473 HRO4425_G03_M05ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4425_G03_M05, mRNA
sequence
Length = 426
Score = 363 bits (183), Expect = e-100
Identities = 276/307 (89%)
Strand = Plus / Plus
Query: 355 tccaggacatgatcaatgaggtcgatgccgatggcaacggcaccatcgattttccagagt 414
|||||||||||||||| || |||||||| |||||||| || ||||| ||||| |||||||
Sbjct: 1 tccaggacatgatcaacgaagtcgatgctgatggcaatggaaccattgatttcccagagt 60
Query: 415 ttctgaaccttatggctcgcaagatgaaggacaccgactctgaggaagagctcaaggagg 474
|||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 61 ttctcaacctgatggctcgcaagatgaaggacactgactcagaggaagagctcaaggagg 120
Query: 475 cctttcgtgtgtttgacaaggaccagaacggcttcatctccgccgccgagctccgccatg 534
|||| | ||||| ||||||||||| || ||||||||||| || || ||||||||||| |
Sbjct: 121 ccttcagggtgttcgacaaggaccaaaatggcttcatctctgctgctgagctccgccacg 180
Query: 535 tcatgacaaatcttggggagaagctaactgatgaggaggtagacgagatgatccgtgagg 594
|||||||||| ||||| ||||||||||| || |||||||| ||||||||||||||||| |
Sbjct: 181 tcatgacaaaccttggcgagaagctaaccgacgaggaggtcgacgagatgatccgtgaag 240
Query: 595 ctgatgtcgatggtgatggccagattaactacgaggagtttgttaaggtcatgatggcca 654
||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 241 ctgatgttgatggtgatggccagatcaactacgaggagtttgtcaaggtcatgatggcca 300
Query: 655 agtgagc 661
| |||||
Sbjct: 301 aatgagc 307
Score = 40.1 bits (20), Expect = 0.004
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 247 tcaaggaggccttcagcctcttcgacaaggac 278
|||||||||||||||| | ||||||||||||
Sbjct: 112 tcaaggaggccttcagggtgttcgacaaggac 143
>gb|CN821431.1|CN821431 HRO4425_C04_E07ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4425_C04_E07, mRNA
sequence
Length = 597
Score = 359 bits (181), Expect = 3e-099
Identities = 280/313 (89%)
Strand = Plus / Plus
Query: 349 ctgagctccaggacatgatcaatgaggtcgatgccgatggcaacggcaccatcgattttc 408
|||||||||||||||||||||| || |||||||| |||||| | || ||||| ||||| |
Sbjct: 1 ctgagctccaggacatgatcaacgaagtcgatgctgatggccatggaaccattgatttcc 60
Query: 409 cagagtttctgaaccttatggctcgcaagatgaaggacaccgactctgaggaagagctca 468
|||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 61 cagagtttctcaacctgatggctcgcaagatgaaggacactgactcagaggaagagctca 120
Query: 469 aggaggcctttcgtgtgtttgacaaggaccagaacggcttcatctccgccgccgagctcc 528
||||||||| | ||||| ||||||||||| || ||||||||||| || || |||||||
Sbjct: 121 cggaggccttcagggtgttcgacaaggaccaaaatggcttcatctctgctgctgagctcc 180
Query: 529 gccatgtcatgacaaatcttggggagaagctaactgatgaggaggtagacgagatgatcc 588
|||| ||||||||||| ||||| ||||||||||| || |||||||| |||||||||||||
Sbjct: 181 gccacgtcatgacaaaccttggcgagaagctaaccgacgaggaggtcgacgagatgatcc 240
Query: 589 gtgaggctgatgtcgatggtgatggccagattaactacgaggagtttgttaaggtcatga 648
|||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 241 gtgaagctgatgttgatggtgatggccagatcaactacgaggagtttgtcaaggtcatga 300
Query: 649 tggccaagtgagc 661
||||||| |||||
Sbjct: 301 tggccaaatgagc 313
>gb|CN815452.1|CN815452 HRO4509_G12_M23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_G12_M23, mRNA sequence
Length = 814
Score = 283 bits (143), Expect = 1e-076
Identities = 284/331 (85%)
Strand = Plus / Minus
Query: 327 ctggggcaaaaccctacagaggctgagctccaggacatgatcaatgaggtcgatgccgat 386
|||||||| || ||||| ||||| ||||| || ||||||||||||||||| ||||| |||
Sbjct: 662 ctggggcagaatcctactgaggcagagcttcaagacatgatcaatgaggtggatgctgat 603
Query: 387 ggcaacggcaccatcgattttccagagtttctgaaccttatggctcgcaagatgaaggac 446
||||| || || || ||||| || || || || ||||||||||| ||||||||||| |||
Sbjct: 602 ggcaatggaacaattgatttccctgaattcctcaaccttatggcccgcaagatgaaagac 543
Query: 447 accgactctgaggaagagctcaaggaggcctttcgtgtgtttgacaaggaccagaacggc 506
|| || ||||||||||||||||||||||| || ||||||||||||||||| || || ||
Sbjct: 542 actgattctgaggaagagctcaaggaggcgttccgtgtgtttgacaaggatcaaaatggt 483
Query: 507 ttcatctccgccgccgagctccgccatgtcatgacaaatcttggggagaagctaactgat 566
|||||||| || || || || |||||||||||||| || || || |||||| | ||||||
Sbjct: 482 ttcatctctgctgctgaactgcgccatgtcatgaccaacctgggtgagaagttgactgat 423
Query: 567 gaggaggtagacgagatgatccgtgaggctgatgtcgatggtgatggccagattaactac 626
|||||||| || |||||| ||||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 422 gaggaggttgatgagatggtccgtgaagctgatgttgatggtgatggccagatcaactac 363
Query: 627 gaggagtttgttaaggtcatgatggccaagt 657
|| || |||||||| ||||||||||||||||
Sbjct: 362 gacgaatttgttaaagtcatgatggccaagt 332
>gb|CN815265.1|CN815265 HRO4507_G06_N11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4507_G06_N11, mRNA sequence
Length = 558
Score = 274 bits (138), Expect = 1e-073
Identities = 258/298 (86%)
Strand = Plus / Plus
Query: 360 gacatgatcaatgaggtcgatgccgatggcaacggcaccatcgattttccagagtttctg 419
||||||||||||||||| |||| ||||||||| || || || ||||| || || || ||
Sbjct: 4 gacatgatcaatgaggtggatgtcgatggcaatggaacaattgatttccctgaattcctc 63
Query: 420 aaccttatggctcgcaagatgaaggacaccgactctgaggaagagctcaaggaggccttt 479
||||||||||| ||||||||||| ||||| || ||||||||||||||||||||||| ||
Sbjct: 64 aaccttatggcccgcaagatgaaagacactgattctgaggaagagctcaaggaggcgttc 123
Query: 480 cgtgtgtttgacaaggaccagaacggcttcatctccgccgccgagctccgccatgtcatg 539
||||||||||||||||| || || || |||||||| || || || || ||||||||||||
Sbjct: 124 cgtgtgtttgacaaggatcaaaatggtttcatctctgctgctgaactgcgccatgtcatg 183
Query: 540 acaaatcttggggagaagctaactgatgaggaggtagacgagatgatccgtgaggctgat 599
|| || || || |||||| | |||||||||||||| || |||||| ||||||||||||||
Sbjct: 184 accaacctgggtgagaagttgactgatgaggaggttgatgagatggtccgtgaggctgat 243
Query: 600 gtcgatggtgatggccagattaactacgaggagtttgttaaggtcatgatggccaagt 657
|| ||||||||||||||||| |||||||| || |||||||| ||||||||||||||||
Sbjct: 244 gttgatggtgatggccagatcaactacgacgaatttgttaaagtcatgatggccaagt 301
>gb|CN815294.1|CN815294 HRO4508_B02_D04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_B02_D04, mRNA sequence
Length = 488
Score = 218 bits (110), Expect = 7e-057
Identities = 201/230 (87%), Gaps = 1/230 (0%)
Strand = Plus / Plus
Query: 432 cgcaagatgaagg-acaccgactctgaggaagagctcaaggaggcctttcgtgtgtttga 490
||||||||||||| |||||||||| ||||| ||||| |||||||| || ||||| |||||
Sbjct: 12 cgcaagatgaaggtacaccgactcggaggaggagctgaaggaggcgttccgtgtttttga 71
Query: 491 caaggaccagaacggcttcatctccgccgccgagctccgccatgtcatgacaaatcttgg 550
||||||||||||||| |||||||| || || ||||||||||| || ||||| || |||||
Sbjct: 72 caaggaccagaacggtttcatctctgcagctgagctccgccaggtgatgaccaaccttgg 131
Query: 551 ggagaagctaactgatgaggaggtagacgagatgatccgtgaggctgatgtcgatggtga 610
||||||||| |||| |||||||| || |||||| |||| ||||| || |||||||||||
Sbjct: 132 ggagaagctctctgaggaggaggtcgaggagatggtccgcgaggccgacgtcgatggtga 191
Query: 611 tggccagattaactacgaggagtttgttaaggtcatgatggccaagtgag 660
|||||||| |||||||| ||||| || ||||||||||||||||||||||
Sbjct: 192 cggccagatcaactacgacgagttcgtcaaggtcatgatggccaagtgag 241
>gb|CN819745.1|CN819745 HRO4403_F05_L09ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4403_F05_L09, mRNA
sequence
Length = 468
Score = 208 bits (105), Expect = 7e-054
Identities = 147/161 (91%)
Strand = Plus / Plus
Query: 501 aacggcttcatctccgccgccgagctccgccatgtcatgacaaatcttggggagaagcta 560
|||||||||||||| || |||||||||||||| ||||||||||| ||||| |||||||||
Sbjct: 17 aacggcttcatctctgctgccgagctccgccacgtcatgacaaaccttggcgagaagcta 76
Query: 561 actgatgaggaggtagacgagatgatccgtgaggctgatgtcgatggtgatggccagatt 620
|| || |||||||| ||||||||||||||||| |||||||| || ||||||||||||||
Sbjct: 77 accgacgaggaggtcgacgagatgatccgtgaagctgatgttgacggtgatggccagatc 136
Query: 621 aactacgaggagtttgttaaggtcatgatggccaagtgagc 661
||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 137 aactacgaggagtttgtcaaggtcatgatggccaaatgagc 177
>gb|CN820154.1|CN820154 HRO4411_G07_N13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4411_G07_N13, mRNA
sequence
Length = 490
Score = 174 bits (88), Expect = 1e-043
Identities = 173/200 (86%), Gaps = 1/200 (0%)
Strand = Plus / Plus
Query: 458 ggaagagctcaaggaggcctttcgtgtgtttgacaaggaccagaacggcttcatctccgc 517
||||||||||| |||||| || ||||||||||||||||| || || || |||||||| ||
Sbjct: 11 ggaagagctca-ggaggcgttccgtgtgtttgacaaggatcaaaatggtttcatctctgc 69
Query: 518 cgccgagctccgccatgtcatgacaaatcttggggagaagctaactgatgaggaggtaga 577
|| || || |||||||||||||| || || || |||||| | |||||||||||||| ||
Sbjct: 70 tgctgaactgcgccatgtcatgaccaacctgggtgagaagttgactgatgaggaggttga 129
Query: 578 cgagatgatccgtgaggctgatgtcgatggtgatggccagattaactacgaggagtttgt 637
|||||| ||||||| |||||||| ||||||||||||||||| |||||||| || |||||
Sbjct: 130 tgagatggtccgtgaagctgatgttgatggtgatggccagatcaactacgacgaatttgt 189
Query: 638 taaggtcatgatggccaagt 657
||| ||||||||||||||||
Sbjct: 190 taaagtcatgatggccaagt 209
>gb|CN814693.1|CN814693 HRO4501_E02_I03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_E02_I03, mRNA sequence
Length = 708
Score = 165 bits (83), Expect = 9e-041
Identities = 122/135 (90%)
Strand = Plus / Plus
Query: 527 ccgccatgtcatgacaaatcttggggagaagctaactgatgaggaggtagacgagatgat 586
|||||||||||||||||| ||||| ||||||||||| || |||||||| |||||||||||
Sbjct: 454 ccgccatgtcatgacaaaccttggcgagaagctaaccgacgaggaggttgacgagatgat 513
Query: 587 ccgtgaggctgatgtcgatggtgatggccagattaactacgaggagtttgttaaggtcat 646
|||||| |||||||| || || ||||||||||| ||||||||||| ||||| ||||||||
Sbjct: 514 ccgtgaagctgatgttgacggcgatggccagatcaactacgaggaatttgtcaaggtcat 573
Query: 647 gatggccaagtgagc 661
||||||||| |||||
Sbjct: 574 gatggccaaatgagc 588
>gb|BE439283.1|BE439283 CDO64_WHE04F12F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO64_WHE04, mRNA sequence
Length = 385
Score = 143 bits (72), Expect = 3e-034
Identities = 96/104 (92%)
Strand = Plus / Minus
Query: 558 ctaactgatgaggaggtagacgagatgatccgtgaggctgatgtcgatggtgatggccag 617
||||| || |||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 385 ctaaccgacgaggaggtcgacgagatgatccgtgaagctgatgttgatggtgatggccag 326
Query: 618 attaactacgaggagtttgttaaggtcatgatggccaagtgagc 661
|| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 325 atcaactacgaggagtttgtcaaggtcatgatggccaaatgagc 282
>gb|CN815915.1|CN815915 HRO4511_H05_P09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_H05_P09, mRNA sequence
Length = 842
Score = 113 bits (57), Expect = 3e-025
Identities = 87/97 (89%)
Strand = Plus / Plus
Query: 345 gaggctgagctccaggacatgatcaatgaggtcgatgccgatggcaacggcaccatcgat 404
||||||||||||||||||||||||||||| ||||| || |||||||| |||||||| |||
Sbjct: 746 gaggctgagctccaggacatgatcaatgaagtcgacgctgatggcaatggcaccattgat 805
Query: 405 tttccagagtttctgaaccttatggctcgcaagatga 441
|| ||||| |||| ||||| ||||||||||||||||
Sbjct: 806 ttcccagaagttctcaacctgatggctcgcaagatga 842
>gb|CN818107.1|CN818107 HRO4471_G09_M17ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4471_G09_M17, mRNA sequence
Length = 463
Score = 101 bits (51), Expect = 1e-021
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 562 ctgatgaggaggtagacgagatgatccgtgaggctgatgtcgatggtgatggccagatta 621
|||| |||||||| || |||||| |||| ||||| || ||||||||||| |||||||| |
Sbjct: 28 ctgaggaggaggtcgaggagatggtccgcgaggccgacgtcgatggtgacggccagatca 87
Query: 622 actacgaggagtttgttaaggtcatgatggccaagtgag 660
||||||| ||||| || ||||||||||||||||||||||
Sbjct: 88 actacgacgagttcgtcaaggtcatgatggccaagtgag 126
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2555
Number of Sequences: 8143
Number of extensions: 2555
Number of successful extensions: 726
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 669
Number of HSP's gapped (non-prelim): 54
length of query: 986
length of database: 4,702,463
effective HSP length: 16
effective length of query: 970
effective length of database: 4,572,175
effective search space: 4435009750
effective search space used: 4435009750
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)