BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440773.2.1
(1437 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN814888.1|CN814888 HRO4503_E12_J23ZS5 Lib AA071E1X Aven... 268 1e-071
gb|CN819077.1|CN819077 HRO4455_D09_G17ZS5 Lib AA070E1X Aven... 42 0.001
gb|AF033097.1|AF033097 Avena sativa nonphototropic hypocoty... 38 0.021
emb|Z48429.1|AFABF1 A.fatua mRNA for DNA-binding protein (c... 34 0.33
emb|AJ251051.1|AFA251051 Avena fatua mRNA for VIP2 protein ... 34 0.33
>gb|CN814888.1|CN814888 HRO4503_E12_J23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_E12_J23, mRNA sequence
Length = 751
Score = 268 bits (135), Expect = 1e-071
Identities = 282/331 (85%)
Strand = Plus / Plus
Query: 588 atctatttgactcattacaaggaacaagagttctgaactgtggacacacaatgcacttga 647
|||||||||| |||||| |||| ||||||||||| | |||||||||||| |||||| ||
Sbjct: 11 atctatttgattcattaaaagggacaagagttcttacctgtggacacaccatgcacatgg 70
Query: 648 catgttttgaagaaatggtggcgcataacaaatacacttgtccaatatgctctaaaacag 707
|||||| || ||||||| ||||| |||||| |||||||||||||||| || || |
Sbjct: 71 actgtttttctgagatggtggaacataataaatactcttgtccaatatgctcgaagacgg 130
Query: 708 ctcttgatttgacacatcattgggaaatgttggatcaagagatcgaagccacgatcatgc 767
||||||| |||||||||| |||| ||||||||||||||||| ||||| || || ||||
Sbjct: 131 ctcttgacatgacacatcactggggcatgttggatcaagagatagaagcaacaattatgc 190
Query: 768 ctcttgtgtatcgctacaagatttgggtgctttgcaacgattgcaacaaggtctcagagg 827
||| |||||| || |||||| ||||||| ||||||||||| |||||||| ||||| ||||
Sbjct: 191 ctcctgtgtaccgttacaaggtttgggttctttgcaacgactgcaacaaagtctcggagg 250
Query: 828 tgaactttcacgtgattggccacaagtgcagccactgcagatcgtacaacacccgaacaa 887
|| |||| ||||||||||||||||| |||||||||||||| || |||||||| ||| | |
Sbjct: 251 tggacttccacgtgattggccacaaatgcagccactgcagctcatacaacactcgatcga 310
Query: 888 catcgcgccctgcagatttatccggaagcag 918
| ||||| |||||||||||||| ||||||||
Sbjct: 311 cctcgcggcctgcagatttatcaggaagcag 341
>gb|CN819077.1|CN819077 HRO4455_D09_G17ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green
leaf Avena sativa cDNA clone HRO4455_D09_G17, mRNA
sequence
Length = 450
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 49 tccgccgtcgccgccgccgccgggg 73
||||||| |||||||||||||||||
Sbjct: 70 tccgccgccgccgccgccgccgggg 46
>gb|AF033097.1|AF033097 Avena sativa nonphototropic hypocotyl 1 (NPH1-2) mRNA, complete cds
Length = 3422
Score = 38.2 bits (19), Expect = 0.021
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 52 gccgtcgccgccgccgccg 70
|||||||||||||||||||
Sbjct: 382 gccgtcgccgccgccgccg 364
>emb|Z48429.1|AFABF1 A.fatua mRNA for DNA-binding protein (clone ABF1)
Length = 1459
Score = 34.2 bits (17), Expect = 0.33
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 54 cgtcgccgccgccgccg 70
|||||||||||||||||
Sbjct: 411 cgtcgccgccgccgccg 395
>emb|AJ251051.1|AFA251051 Avena fatua mRNA for VIP2 protein (vip2 gene)
Length = 1724
Score = 34.2 bits (17), Expect = 0.33
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 54 cgtcgccgccgccgccgggga 74
|||||||||||||| ||||||
Sbjct: 297 cgtcgccgccgccggcgggga 317
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3790
Number of Sequences: 8143
Number of extensions: 3790
Number of successful extensions: 1079
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1060
Number of HSP's gapped (non-prelim): 14
length of query: 1437
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1420
effective length of database: 4,564,032
effective search space: 6480925440
effective search space used: 6480925440
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)