BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161238.2.1
(1225 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815203.1|CN815203 HRO4507_A07_B13ZS5 Lib AA071E1X Aven... 34 0.28
gb|CN818410.1|CN818410 HRO4469_C03_F05ZS5 Lib AA070E1X Aven... 34 0.28
gb|CN820329.1|CN820329 HRO4418_B06_C12ZS5 Lib AA069E1X Aven... 34 0.28
>gb|CN815203.1|CN815203 HRO4507_A07_B13ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4507_A07_B13, mRNA sequence
Length = 584
Score = 34.2 bits (17), Expect = 0.28
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 102 acatacagacatacagt 118
|||||||||||||||||
Sbjct: 468 acatacagacatacagt 484
>gb|CN818410.1|CN818410 HRO4469_C03_F05ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4469_C03_F05, mRNA sequence
Length = 572
Score = 34.2 bits (17), Expect = 0.28
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 102 acatacagacatacagt 118
|||||||||||||||||
Sbjct: 395 acatacagacatacagt 411
>gb|CN820329.1|CN820329 HRO4418_B06_C12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_B06_C12, mRNA
sequence
Length = 584
Score = 34.2 bits (17), Expect = 0.28
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 102 acatacagacatacagt 118
|||||||||||||||||
Sbjct: 384 acatacagacatacagt 400
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2867
Number of Sequences: 8143
Number of extensions: 2867
Number of successful extensions: 626
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 623
Number of HSP's gapped (non-prelim): 3
length of query: 1225
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1209
effective length of database: 4,572,175
effective search space: 5527759575
effective search space used: 5527759575
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)