BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1738875.2.1
(761 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN819625.1|CN819625 HRO4402_C11_E22ZS5 Lib AA069E1X Aven... 34 0.17
gb|CN814659.1|CN814659 HRO4501_B04_C07ZS5 Lib AA071E1X Aven... 32 0.69
gb|CN817454.1|CN817454 HRO4454_F06_L12ZS5 Lib AA070E1X Aven... 32 0.69
gb|CN820383.1|CN820383 HRO4418_G03_M06ZS5 Lib AA069E1X Aven... 32 0.69
gb|BE439301.1|BE439301 CDO1403_WHE05F04F ITEC CDO Oat cDNA ... 30 2.7
gb|CN815724.1|CN815724 HRO4514_G12_M24ZS5 Lib AA071E1X Aven... 30 2.7
gb|CN816322.1|CN816322 HRO4519_D09_H17ZS5 Lib AA071E1X Aven... 30 2.7
gb|CN818158.1|CN818158 HRO4456_G03_M06ZS5 Lib AA070E1X Aven... 30 2.7
gb|CN819182.1|CN819182 HRO4451_B02_C03ZS5 Lib AA070E1X Aven... 30 2.7
gb|CN820259.1|CN820259 HRO4417_D01_G01ZS5 Lib AA069E1X Aven... 30 2.7
gb|CN821153.1|CN821153 HRO4428_B01_D02ZS5 Lib AA069E1X Aven... 30 2.7
gb|CN821434.1|CN821434 HRO4425_C07_E13ZS5 Lib AA069E1X Aven... 30 2.7
>gb|CN819625.1|CN819625 HRO4402_C11_E22ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_C11_E22, mRNA
sequence
Length = 678
Score = 34.2 bits (17), Expect = 0.17
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 575 atttttccatgtactgt 591
|||||||||||||||||
Sbjct: 560 atttttccatgtactgt 544
>gb|CN814659.1|CN814659 HRO4501_B04_C07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_B04_C07, mRNA sequence
Length = 792
Score = 32.2 bits (16), Expect = 0.69
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 573 ctatttttccatgtactgtc 592
||||||||||||||| ||||
Sbjct: 650 ctatttttccatgtagtgtc 669
>gb|CN817454.1|CN817454 HRO4454_F06_L12ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4454_F06_L12, mRNA sequence
Length = 485
Score = 32.2 bits (16), Expect = 0.69
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 346 gggcgagggcctcgac 361
||||||||||||||||
Sbjct: 10 gggcgagggcctcgac 25
>gb|CN820383.1|CN820383 HRO4418_G03_M06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_G03_M06, mRNA
sequence
Length = 425
Score = 32.2 bits (16), Expect = 0.69
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 626 atatatgcatttcatg 641
||||||||||||||||
Sbjct: 341 atatatgcatttcatg 356
>gb|BE439301.1|BE439301 CDO1403_WHE05F04F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO1403_WHE05, mRNA sequence
Length = 264
Score = 30.2 bits (15), Expect = 2.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 477 gtcgtcgtctcgttc 491
|||||||||||||||
Sbjct: 244 gtcgtcgtctcgttc 230
>gb|CN815724.1|CN815724 HRO4514_G12_M24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_G12_M24, mRNA sequence
Length = 702
Score = 30.2 bits (15), Expect = 2.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 135 gcatctccgactgga 149
|||||||||||||||
Sbjct: 173 gcatctccgactgga 159
>gb|CN816322.1|CN816322 HRO4519_D09_H17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4519_D09_H17, mRNA sequence
Length = 354
Score = 30.2 bits (15), Expect = 2.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 508 gtccgtccgcaaata 522
|||||||||||||||
Sbjct: 304 gtccgtccgcaaata 290
>gb|CN818158.1|CN818158 HRO4456_G03_M06ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4456_G03_M06, mRNA sequence
Length = 454
Score = 30.2 bits (15), Expect = 2.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 347 ggcgagggcctcgac 361
|||||||||||||||
Sbjct: 97 ggcgagggcctcgac 111
>gb|CN819182.1|CN819182 HRO4451_B02_C03ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4451_B02_C03, mRNA sequence
Length = 357
Score = 30.2 bits (15), Expect = 2.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 347 ggcgagggcctcgac 361
|||||||||||||||
Sbjct: 15 ggcgagggcctcgac 29
>gb|CN820259.1|CN820259 HRO4417_D01_G01ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4417_D01_G01, mRNA
sequence
Length = 305
Score = 30.2 bits (15), Expect = 2.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 347 ggcgagggcctcgac 361
|||||||||||||||
Sbjct: 149 ggcgagggcctcgac 163
>gb|CN821153.1|CN821153 HRO4428_B01_D02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_B01_D02, mRNA
sequence
Length = 637
Score = 30.2 bits (15), Expect = 2.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 637 tcatgcaagaccagg 651
|||||||||||||||
Sbjct: 132 tcatgcaagaccagg 146
>gb|CN821434.1|CN821434 HRO4425_C07_E13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4425_C07_E13, mRNA
sequence
Length = 435
Score = 30.2 bits (15), Expect = 2.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 742 ttggctggtttaatt 756
|||||||||||||||
Sbjct: 309 ttggctggtttaatt 323
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1767
Number of Sequences: 8143
Number of extensions: 1767
Number of successful extensions: 509
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 495
Number of HSP's gapped (non-prelim): 14
length of query: 761
length of database: 4,702,463
effective HSP length: 16
effective length of query: 745
effective length of database: 4,572,175
effective search space: 3406270375
effective search space used: 3406270375
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)