BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AF332176.2.1
(912 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CL463382.1|CL463382 SAIL_1184_G05.v1 SAIL Collection Ara... 42 0.17
emb|AX509338.1| Sequence 4033 from Patent WO0216655 42 0.17
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 42 0.17
emb|AL096882.2|ATF8L21 Arabidopsis thaliana DNA chromosome ... 42 0.17
emb|AL161531.2|ATCHRIV31 Arabidopsis thaliana DNA chromosom... 42 0.17
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 42 0.17
>gb|CL463382.1|CL463382 SAIL_1184_G05.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_1184_G05.v1, DNA sequence
Length = 993
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 7 cgtgggcggcggcgcgtgcgg 27
|||||||||||||||||||||
Sbjct: 695 cgtgggcggcggcgcgtgcgg 675
>emb|AX509338.1| Sequence 4033 from Patent WO0216655
Length = 2000
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 818 ctctacctagctagctagcta 838
|||||||||||||||||||||
Sbjct: 17 ctctacctagctagctagcta 37
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 818 ctctacctagctagctagcta 838
|||||||||||||||||||||
Sbjct: 2780742 ctctacctagctagctagcta 2780762
>emb|AL096882.2|ATF8L21 Arabidopsis thaliana DNA chromosome 4, BAC clone F8L21 (ESSA project)
Length = 98948
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 818 ctctacctagctagctagcta 838
|||||||||||||||||||||
Sbjct: 39241 ctctacctagctagctagcta 39261
>emb|AL161531.2|ATCHRIV31 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 31
Length = 198301
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 818 ctctacctagctagctagcta 838
|||||||||||||||||||||
Sbjct: 112247 ctctacctagctagctagcta 112267
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 818 ctctacctagctagctagcta 838
|||||||||||||||||||||
Sbjct: 6868005 ctctacctagctagctagcta 6868025
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 300,373
Number of Sequences: 1013581
Number of extensions: 300373
Number of successful extensions: 26974
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26615
Number of HSP's gapped (non-prelim): 359
length of query: 912
length of database: 908,940,872
effective HSP length: 20
effective length of query: 892
effective length of database: 888,669,252
effective search space: 792692972784
effective search space used: 792692972784
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)