BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3923331.2.1
(496 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV788365.1|AV788365 AV788365 RAFL6 Arabidopsis thaliana ... 40 0.35
gb|AV792413.1|AV792413 AV792413 RAFL7 Arabidopsis thaliana ... 40 0.35
gb|AV792426.1|AV792426 AV792426 RAFL7 Arabidopsis thaliana ... 40 0.35
gb|BX835636.1|BX835636 BX835636 Arabidopsis thaliana Adult ... 40 0.35
gb|BP611430.1|BP611430 BP611430 RAFL16 Arabidopsis thaliana... 40 0.35
gb|BP671647.1|BP671647 BP671647 RAFL21 Arabidopsis thaliana... 40 0.35
gb|AY054522.1| Arabidopsis thaliana Putative fucosyltransfe... 40 0.35
emb|AJ404861.2|ATH404861 Arabidopsis thaliana mRNA for trun... 40 0.35
emb|AJ345085.1|ATH345085 Arabidopsis thaliana mRNA for core... 40 0.35
gb|BT002570.1| Arabidopsis thaliana Putative fucosyltransfe... 40 0.35
gb|AC011807.4|AC011807 Arabidopsis thaliana chromosome I BA... 40 0.35
gb|AY184990.1| Arabidopsis thaliana core alpha 1, 3-fucosyl... 40 0.35
gb|AY184991.1| Arabidopsis thaliana alpha 1, 3-fucosyltrans... 40 0.35
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 40 0.35
ref|NM_103858.2| Arabidopsis thaliana FUT12; fucosyltransfe... 40 0.35
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 40 0.35
>gb|AV788365.1|AV788365 AV788365 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-79-D13 3',
mRNA sequence
Length = 427
Score = 40.1 bits (20), Expect = 0.35
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 252 ttcagaatcatccctaaatc 271
||||||||||||||||||||
Sbjct: 144 ttcagaatcatccctaaatc 125
>gb|AV792413.1|AV792413 AV792413 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-14-O09 3',
mRNA sequence
Length = 433
Score = 40.1 bits (20), Expect = 0.35
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 279 gtacaaagcctgacgttgcgttag 302
|||||||||||| |||||||||||
Sbjct: 323 gtacaaagcctgtcgttgcgttag 346
>gb|AV792426.1|AV792426 AV792426 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-14-P14 3',
mRNA sequence
Length = 435
Score = 40.1 bits (20), Expect = 0.35
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 279 gtacaaagcctgacgttgcgttag 302
|||||||||||| |||||||||||
Sbjct: 369 gtacaaagcctgtcgttgcgttag 392
>gb|BX835636.1|BX835636 BX835636 Arabidopsis thaliana Adult vegetative tissue Col-0
Arabidopsis thaliana cDNA clone GSLTLS94ZE07 3PRIM, mRNA
sequence
Length = 548
Score = 40.1 bits (20), Expect = 0.35
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 279 gtacaaagcctgacgttgcgttag 302
|||||||||||| |||||||||||
Sbjct: 283 gtacaaagcctgtcgttgcgttag 306
>gb|BP611430.1|BP611430 BP611430 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-85-L16 3',
mRNA sequence
Length = 466
Score = 40.1 bits (20), Expect = 0.35
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 279 gtacaaagcctgacgttgcgttag 302
|||||||||||| |||||||||||
Sbjct: 329 gtacaaagcctgtcgttgcgttag 352
>gb|BP671647.1|BP671647 BP671647 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-41-E06 3',
mRNA sequence
Length = 425
Score = 40.1 bits (20), Expect = 0.35
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 279 gtacaaagcctgacgttgcgttag 302
|||||||||||| |||||||||||
Sbjct: 311 gtacaaagcctgtcgttgcgttag 334
>gb|AY054522.1| Arabidopsis thaliana Putative fucosyltransferase (At1g49710;
F14J22.8) mRNA, complete cds
Length = 1938
Score = 40.1 bits (20), Expect = 0.35
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 279 gtacaaagcctgacgttgcgttag 302
|||||||||||| |||||||||||
Sbjct: 1617 gtacaaagcctgtcgttgcgttag 1594
>emb|AJ404861.2|ATH404861 Arabidopsis thaliana mRNA for truncated alpha1,3-fucosyltransferase
(FucTB gene)
Length = 1834
Score = 40.1 bits (20), Expect = 0.35
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 279 gtacaaagcctgacgttgcgttag 302
|||||||||||| |||||||||||
Sbjct: 1531 gtacaaagcctgtcgttgcgttag 1508
>emb|AJ345085.1|ATH345085 Arabidopsis thaliana mRNA for core-alpha1,3fucosyltransferase 2
(fucT2 gene)
Length = 1542
Score = 40.1 bits (20), Expect = 0.35
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 279 gtacaaagcctgacgttgcgttag 302
|||||||||||| |||||||||||
Sbjct: 1458 gtacaaagcctgtcgttgcgttag 1435
>gb|BT002570.1| Arabidopsis thaliana Putative fucosyltransferase (At1g49710) mRNA,
complete cds
Length = 1725
Score = 40.1 bits (20), Expect = 0.35
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 279 gtacaaagcctgacgttgcgttag 302
|||||||||||| |||||||||||
Sbjct: 1458 gtacaaagcctgtcgttgcgttag 1435
>gb|AC011807.4|AC011807 Arabidopsis thaliana chromosome I BAC F14J22 genomic sequence, complete
sequence
Length = 104679
Score = 40.1 bits (20), Expect = 0.35
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 279 gtacaaagcctgacgttgcgttag 302
|||||||||||| |||||||||||
Sbjct: 45150 gtacaaagcctgtcgttgcgttag 45127
>gb|AY184990.1| Arabidopsis thaliana core alpha 1, 3-fucosyltransferase mRNA,
complete cds
Length = 1607
Score = 40.1 bits (20), Expect = 0.35
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 279 gtacaaagcctgacgttgcgttag 302
|||||||||||| |||||||||||
Sbjct: 1505 gtacaaagcctgtcgttgcgttag 1482
>gb|AY184991.1| Arabidopsis thaliana alpha 1, 3-fucosyltransferase-like protein mRNA,
complete cds; alternatively spliced
Length = 1568
Score = 40.1 bits (20), Expect = 0.35
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 279 gtacaaagcctgacgttgcgttag 302
|||||||||||| |||||||||||
Sbjct: 1466 gtacaaagcctgtcgttgcgttag 1443
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 40.1 bits (20), Expect = 0.35
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 279 gtacaaagcctgacgttgcgttag 302
|||||||||||| |||||||||||
Sbjct: 2750968 gtacaaagcctgtcgttgcgttag 2750991
>ref|NM_103858.2| Arabidopsis thaliana FUT12; fucosyltransferase/ transferase,
transferring glycosyl groups AT1G49710 (FUT12) mRNA,
complete cds
Length = 1984
Score = 40.1 bits (20), Expect = 0.35
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 279 gtacaaagcctgacgttgcgttag 302
|||||||||||| |||||||||||
Sbjct: 1616 gtacaaagcctgtcgttgcgttag 1593
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 40.1 bits (20), Expect = 0.35
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 279 gtacaaagcctgacgttgcgttag 302
|||||||||||| |||||||||||
Sbjct: 18395374 gtacaaagcctgtcgttgcgttag 18395397
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 335,010
Number of Sequences: 1013581
Number of extensions: 335010
Number of successful extensions: 18329
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18112
Number of HSP's gapped (non-prelim): 217
length of query: 496
length of database: 908,940,872
effective HSP length: 20
effective length of query: 476
effective length of database: 888,669,252
effective search space: 423006563952
effective search space used: 423006563952
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)