BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3198841.2.2
(602 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY070720.1| Arabidopsis thaliana AT5g25560/T14C9_100 mRN... 58 2e-006
emb|BX831389.1|CNS0A1NP Arabidopsis thaliana Full-length cD... 58 2e-006
ref|NM_122467.2| Arabidopsis thaliana protein binding / ubi... 58 2e-006
gb|BP847984.1|BP847984 BP847984 RAFL21 Arabidopsis thaliana... 54 3e-005
gb|BP853639.1|BP853639 BP853639 RAFL21 Arabidopsis thaliana... 54 3e-005
gb|AV560651.1|AV560651 AV560651 Arabidopsis thaliana green ... 52 1e-004
emb|AJ596108.1| Arabidopsis thaliana T-DNA flanking sequenc... 48 0.002
gb|AC006601.1|AC006601 Arabidopsis thaliana chromosome V ma... 48 0.002
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 48 0.002
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 48 0.002
gb|AV826141.1|AV826141 AV826141 RAFL8 Arabidopsis thaliana ... 46 0.007
gb|CB259861.1|CB259861 18-E011177-013-009-C06-T7R MPIZ-ADIS... 46 0.007
gb|BP849322.1|BP849322 BP849322 RAFL21 Arabidopsis thaliana... 46 0.007
gb|BP852216.1|BP852216 BP852216 RAFL21 Arabidopsis thaliana... 46 0.007
gb|BP860241.1|BP860241 BP860241 RAFL21 Arabidopsis thaliana... 46 0.007
gb|BP861089.1|BP861089 BP861089 RAFL21 Arabidopsis thaliana... 46 0.007
gb|BP861307.1|BP861307 BP861307 RAFL21 Arabidopsis thaliana... 46 0.007
gb|BP866007.1|BP866007 BP866007 RAFL21 Arabidopsis thaliana... 46 0.007
gb|BP868217.1|BP868217 BP868217 RAFL21 Arabidopsis thaliana... 46 0.007
gb|AY052362.1| Arabidopsis thaliana AT5g22920/MRN17_15 mRNA... 46 0.007
gb|BT002635.1| Arabidopsis thaliana At5g22920/MRN17_15 gene... 46 0.007
gb|AY088138.1| Arabidopsis thaliana clone 41666 mRNA, compl... 46 0.007
gb|DQ059131.1| Arabidopsis thaliana RING finger family prot... 46 0.007
ref|NM_122198.2| Arabidopsis thaliana ubiquitin-protein lig... 46 0.007
gb|F14116.1|F14116 ATTS5038 Versailles-VB Arabidopsis thali... 44 0.027
gb|BP829596.1|BP829596 BP829596 RAFL19 Arabidopsis thaliana... 44 0.027
gb|BP841725.1|BP841725 BP841725 RAFL21 Arabidopsis thaliana... 44 0.027
gb|BP849385.1|BP849385 BP849385 RAFL21 Arabidopsis thaliana... 44 0.027
gb|BP849698.1|BP849698 BP849698 RAFL21 Arabidopsis thaliana... 44 0.027
gb|BP854359.1|BP854359 BP854359 RAFL21 Arabidopsis thaliana... 44 0.027
gb|BP860319.1|BP860319 BP860319 RAFL21 Arabidopsis thaliana... 44 0.027
gb|BP865031.1|BP865031 BP865031 RAFL21 Arabidopsis thaliana... 44 0.027
gb|BP869042.1|BP869042 BP869042 RAFL21 Arabidopsis thaliana... 44 0.027
dbj|AB005243.1| Arabidopsis thaliana genomic DNA, chromosom... 44 0.027
gb|CL500839.1|CL500839 SAIL_68_C02.v2 SAIL Collection Arabi... 42 0.11
gb|CW846914.1|CW846914 GT13793.Ds3.05.23.2004.jx62.663 Arab... 40 0.43
gb|AF013293.1|IG005I10 Arabidopsis thaliana BAC IG005I10 40 0.43
gb|AF195115.1|F5I10 Arabidopsis thaliana BAC F5I10 40 0.43
emb|AJ270058.1| Arabidopsis thaliana DNA chromosome 4, shor... 40 0.43
emb|CR384907.1| Arabidopsis thaliana transposon insertion S... 40 0.43
emb|AL161471.2|ATCHRIV1 Arabidopsis thaliana DNA chromosome... 40 0.43
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 40 0.43
>gb|AY070720.1| Arabidopsis thaliana AT5g25560/T14C9_100 mRNA sequence
Length = 2903
Score = 58.0 bits (29), Expect = 2e-006
Identities = 119/149 (79%)
Strand = Plus / Plus
Query: 396 tgtggcactgaacaggaggtgcgacaagtatgtatcaattgcggtgtttgcatggggaag 455
||||| |||||||| |||||| | ||| | |||||| | || || || ||||||||||||
Sbjct: 2012 tgtggtactgaacaagaggtgggccaaatttgtatccactgtggagtgtgcatggggaag 2071
Query: 456 tacttctgtggtttgtgcaaactcttcgacgatgatgtctctaaacagcagtatcactgc 515
||||||||| | ||||| |||| ||| |||||| |||||| | ||||| ||||||
Sbjct: 2072 tacttctgtaaagtctgcaagctctacgatgatgatacgtctaaaaaacagtaccactgc 2131
Query: 516 aacggatgtggaatatgtagaatcggagg 544
| || |||||||| || |||||||||||
Sbjct: 2132 gatgggtgtggaatttgcagaatcggagg 2160
Score = 48.1 bits (24), Expect = 0.002
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 234 tgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaatttttgat 293
||||||||||| ||||| || || |||| |||||||||||||| ||||| || |||| |
Sbjct: 1850 tgtccacattacagaagaaggtgttgcattagagctccttgctgtaatgagatctttggt 1909
Query: 294 tgcc 297
||||
Sbjct: 1910 tgcc 1913
>emb|BX831389.1|CNS0A1NP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS85ZE03 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2640
Score = 58.0 bits (29), Expect = 2e-006
Identities = 119/149 (79%)
Strand = Plus / Plus
Query: 396 tgtggcactgaacaggaggtgcgacaagtatgtatcaattgcggtgtttgcatggggaag 455
||||| |||||||| |||||| | ||| | |||||| | || || || ||||||||||||
Sbjct: 1815 tgtggtactgaacaagaggtgggccaaatttgtatccactgtggagtgtgcatggggaag 1874
Query: 456 tacttctgtggtttgtgcaaactcttcgacgatgatgtctctaaacagcagtatcactgc 515
||||||||| | ||||| |||| ||| |||||| |||||| | ||||| ||||||
Sbjct: 1875 tacttctgtaaagtctgcaagctctacgatgatgatacgtctaaaaaacagtaccactgc 1934
Query: 516 aacggatgtggaatatgtagaatcggagg 544
| || |||||||| || |||||||||||
Sbjct: 1935 gatgggtgtggaatttgcagaatcggagg 1963
>ref|NM_122467.2| Arabidopsis thaliana protein binding / ubiquitin-protein ligase/
zinc ion binding AT5G25560 mRNA, complete cds
Length = 1034
Score = 58.0 bits (29), Expect = 2e-006
Identities = 119/149 (79%)
Strand = Plus / Plus
Query: 396 tgtggcactgaacaggaggtgcgacaagtatgtatcaattgcggtgtttgcatggggaag 455
||||| |||||||| |||||| | ||| | |||||| | || || || ||||||||||||
Sbjct: 456 tgtggtactgaacaagaggtgggccaaatttgtatccactgtggagtgtgcatggggaag 515
Query: 456 tacttctgtggtttgtgcaaactcttcgacgatgatgtctctaaacagcagtatcactgc 515
||||||||| | ||||| |||| ||| |||||| |||||| | ||||| ||||||
Sbjct: 516 tacttctgtaaagtctgcaagctctacgatgatgatacgtctaaaaaacagtaccactgc 575
Query: 516 aacggatgtggaatatgtagaatcggagg 544
| || |||||||| || |||||||||||
Sbjct: 576 gatgggtgtggaatttgcagaatcggagg 604
Score = 52.0 bits (26), Expect = 1e-004
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 228 tatgggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaatt 287
||||| ||||||||||| ||||| || || |||| |||||||||||||| ||||| ||
Sbjct: 288 tatggatgtccacattacagaagaaggtgttgcattagagctccttgctgtaatgagatc 347
Query: 288 tttgattgcc 297
|||| |||||
Sbjct: 348 tttggttgcc 357
>gb|BP847984.1|BP847984 BP847984 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-03-M23 5',
mRNA sequence
Length = 388
Score = 54.0 bits (27), Expect = 3e-005
Identities = 78/95 (82%)
Strand = Plus / Plus
Query: 231 gggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaattttt 290
|||||||||||||||||||| ||||| || ||||| || || || |||| ||||||
Sbjct: 225 gggtgtccacattatagaagacgatgcaagattagagcaccatgttgtgatgagattttt 284
Query: 291 gattgccgacactgccacaatgaaactaagaattc 325
|||||| |||| |||||||| ||| ||||| ||||
Sbjct: 285 gattgcagacattgccacaacgaagctaaggattc 319
>gb|BP853639.1|BP853639 BP853639 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-58-P07 5',
mRNA sequence
Length = 394
Score = 54.0 bits (27), Expect = 3e-005
Identities = 78/95 (82%)
Strand = Plus / Plus
Query: 231 gggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaattttt 290
|||||||||||||||||||| ||||| || ||||| || || || |||| |||||
Sbjct: 221 gggtgtccacattatagaagacgatgcaagattagagcaccatgttgtgatgagattttg 280
Query: 291 gattgccgacactgccacaatgaaactaagaattc 325
||||||||||| |||||||| ||| ||||| ||||
Sbjct: 281 gattgccgacattgccacaacgaagctaaggattc 315
>gb|AV560651.1|AV560651 AV560651 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ138c08F 3', mRNA sequence
Length = 594
Score = 52.0 bits (26), Expect = 1e-004
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 228 tatgggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaatt 287
||||| ||||||||||| ||||| || || |||| |||||||||||||| ||||| ||
Sbjct: 307 tatggatgtccacattacagaagaaggtgttgcattagagctccttgctgtaatgagatc 248
Query: 288 tttgattgcc 297
|||| |||||
Sbjct: 247 tttggttgcc 238
Score = 50.1 bits (25), Expect = 4e-004
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 396 tgtggcactgaacaggaggtgcgacaagtatgtatcaattgcggtgtttgcatggggaag 455
||||| |||||||| |||||| | ||| | |||||| | || || || ||||||||||||
Sbjct: 139 tgtggtactgaacaagaggtgggccaaatttgtatccactgtggagtgtgcatggggaag 80
Query: 456 tacttctgt 464
|||||||||
Sbjct: 79 tacttctgt 71
>emb|AJ596108.1| Arabidopsis thaliana T-DNA flanking sequence, left border, clone
429B01, genomic survey sequence
Length = 876
Score = 48.1 bits (24), Expect = 0.002
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 234 tgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaatttttgat 293
||||||||||| ||||| || || |||| |||||||||||||| ||||| || |||| |
Sbjct: 413 tgtccacattacagaagaaggtgttgcattagagctccttgctgtaatgagatctttggt 354
Query: 294 tgcc 297
||||
Sbjct: 353 tgcc 350
>gb|AC006601.1|AC006601 Arabidopsis thaliana chromosome V map near 60.5 cM, complete sequence
Length = 110684
Score = 48.1 bits (24), Expect = 0.002
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 234 tgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaatttttgat 293
||||||||||| ||||| || || |||| |||||||||||||| ||||| || |||| |
Sbjct: 57537 tgtccacattacagaagaaggtgttgcattagagctccttgctgtaatgagatctttggt 57596
Query: 294 tgcc 297
||||
Sbjct: 57597 tgcc 57600
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 444 tgcatggggaagtacttctgt 464
|||||||||||||||||||||
Sbjct: 58043 tgcatggggaagtacttctgt 58063
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 48.1 bits (24), Expect = 0.002
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 234 tgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaatttttgat 293
||||||||||| ||||| || || |||| |||||||||||||| ||||| || |||| |
Sbjct: 8390120 tgtccacattacagaagaaggtgttgcattagagctccttgctgtaatgagatctttggt 8390179
Query: 294 tgcc 297
||||
Sbjct: 8390180 tgcc 8390183
Score = 44.1 bits (22), Expect = 0.027
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 431 caattgcggtgtttgcatggggaagtacttctgt 464
|||||| ||||| || ||||||||||||||||||
Sbjct: 7306182 caattgtggtgtatgtatggggaagtacttctgt 7306215
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 444 tgcatggggaagtacttctgt 464
|||||||||||||||||||||
Sbjct: 8390626 tgcatggggaagtacttctgt 8390646
Score = 42.1 bits (21), Expect = 0.11
Identities = 72/89 (80%)
Strand = Plus / Plus
Query: 232 ggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaatttttg 291
||||| ||||||||||||| ||||| || ||||| || || || |||| |||||||
Sbjct: 7305686 ggtgttcacattatagaagacgatgcaagattagagcaccatgttgtgatgagatttttg 7305745
Query: 292 attgccgacactgccacaatgaaactaag 320
||||| |||| |||||||| ||| |||||
Sbjct: 7305746 attgcagacattgccacaacgaagctaag 7305774
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 48.1 bits (24), Expect = 0.002
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 234 tgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaatttttgat 293
||||||||||| ||||| || || |||| |||||||||||||| ||||| || |||| |
Sbjct: 8899750 tgtccacattacagaagaaggtgttgcattagagctccttgctgtaatgagatctttggt 8899809
Query: 294 tgcc 297
||||
Sbjct: 8899810 tgcc 8899813
Score = 44.1 bits (22), Expect = 0.027
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 431 caattgcggtgtttgcatggggaagtacttctgt 464
|||||| ||||| || ||||||||||||||||||
Sbjct: 7665814 caattgtggtgtatgtatggggaagtacttctgt 7665847
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 444 tgcatggggaagtacttctgt 464
|||||||||||||||||||||
Sbjct: 8900256 tgcatggggaagtacttctgt 8900276
Score = 42.1 bits (21), Expect = 0.11
Identities = 72/89 (80%)
Strand = Plus / Plus
Query: 232 ggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaatttttg 291
||||| ||||||||||||| ||||| || ||||| || || || |||| |||||||
Sbjct: 7665318 ggtgttcacattatagaagacgatgcaagattagagcaccatgttgtgatgagatttttg 7665377
Query: 292 attgccgacactgccacaatgaaactaag 320
||||| |||| |||||||| ||| |||||
Sbjct: 7665378 attgcagacattgccacaacgaagctaag 7665406
>gb|AV826141.1|AV826141 AV826141 RAFL8 Arabidopsis thaliana cDNA clone RAFL08-09-P06 5',
mRNA sequence
Length = 632
Score = 46.1 bits (23), Expect = 0.007
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 231 gggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaattttt 290
|||||| ||||||||||||| ||||| || ||||| || || || |||| ||||||
Sbjct: 229 gggtgttcacattatagaagacgatgcaagattagagcaccatgttgtgatgagattttt 288
Query: 291 gattgccgacactgccacaatgaaactaagaattc 325
|||||| |||| |||||||| ||| ||||| ||||
Sbjct: 289 gattgcagacattgccacaacgaagctaaggattc 323
Score = 44.1 bits (22), Expect = 0.027
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 431 caattgcggtgtttgcatggggaagtacttctgt 464
|||||| ||||| || ||||||||||||||||||
Sbjct: 429 caattgtggtgtatgtatggggaagtacttctgt 462
>gb|CB259861.1|CB259861 18-E011177-013-009-C06-T7R MPIZ-ADIS-013 Arabidopsis thaliana cDNA
clone MPIZp770C069Q 5-PRIME, mRNA sequence
Length = 473
Score = 46.1 bits (23), Expect = 0.007
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 231 gggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaattttt 290
|||||| ||||||||||||| ||||| || ||||| || || || |||| ||||||
Sbjct: 187 gggtgttcacattatagaagacgatgcaagattagagcaccatgttgtgatgagattttt 246
Query: 291 gattgccgacactgccacaatgaaactaagaattc 325
|||||| |||| |||||||| ||| ||||| ||||
Sbjct: 247 gattgcagacattgccacaacgaagctaaggattc 281
Score = 44.1 bits (22), Expect = 0.027
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 431 caattgcggtgtttgcatggggaagtacttctgt 464
|||||| ||||| || ||||||||||||||||||
Sbjct: 387 caattgtggtgtatgtatggggaagtacttctgt 420
>gb|BP849322.1|BP849322 BP849322 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-08-L05 5',
mRNA sequence
Length = 385
Score = 46.1 bits (23), Expect = 0.007
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 231 gggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaattttt 290
|||||| ||||||||||||| ||||| || ||||| || || || |||| ||||||
Sbjct: 233 gggtgttcacattatagaagacgatgcaagattagagcaccatgttgtgatgagattttt 292
Query: 291 gattgccgacactgccacaatgaaactaagaattc 325
|||||| |||| |||||||| ||| ||||| ||||
Sbjct: 293 gattgcagacattgccacaacgaagctaaggattc 327
>gb|BP852216.1|BP852216 BP852216 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-19-C05 5',
mRNA sequence
Length = 376
Score = 46.1 bits (23), Expect = 0.007
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 231 gggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaattttt 290
|||||| ||||||||||||| ||||| || ||||| || || || |||| ||||||
Sbjct: 225 gggtgttcacattatagaagacgatgcaagattagagcaccatgttgtgatgagattttt 284
Query: 291 gattgccgacactgccacaatgaaactaagaattc 325
|||||| |||| |||||||| ||| ||||| ||||
Sbjct: 285 gattgcagacattgccacaacgaagctaaggattc 319
>gb|BP860241.1|BP860241 BP860241 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-43-H23 5',
mRNA sequence
Length = 352
Score = 46.1 bits (23), Expect = 0.007
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 231 gggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaattttt 290
|||||| ||||||||||||| ||||| || ||||| || || || |||| ||||||
Sbjct: 226 gggtgttcacattatagaagacgatgcaagattagagcaccatgttgtgatgagattttt 285
Query: 291 gattgccgacactgccacaatgaaactaagaattc 325
|||||| |||| |||||||| ||| ||||| ||||
Sbjct: 286 gattgcagacattgccacaacgaagctaaggattc 320
>gb|BP861089.1|BP861089 BP861089 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-46-F13 5',
mRNA sequence
Length = 366
Score = 46.1 bits (23), Expect = 0.007
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 231 gggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaattttt 290
|||||| ||||||||||||| ||||| || ||||| || || || |||| ||||||
Sbjct: 224 gggtgttcacattatagaagacgatgcaagattagagcaccatgttgtgatgagattttt 283
Query: 291 gattgccgacactgccacaatgaaactaagaattc 325
|||||| |||| |||||||| ||| ||||| ||||
Sbjct: 284 gattgcagacattgccacaacgaagctaaggattc 318
>gb|BP861307.1|BP861307 BP861307 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-47-D07 5',
mRNA sequence
Length = 390
Score = 46.1 bits (23), Expect = 0.007
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 231 gggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaattttt 290
|||||| ||||||||||||| ||||| || ||||| || || || |||| ||||||
Sbjct: 226 gggtgttcacattatagaagacgatgcaagattagagcaccatgttgtgatgagattttt 285
Query: 291 gattgccgacactgccacaatgaaactaagaattc 325
|||||| |||| |||||||| ||| ||||| ||||
Sbjct: 286 gattgcagacattgccacaacgaagctaaggattc 320
>gb|BP866007.1|BP866007 BP866007 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-76-D20 5',
mRNA sequence
Length = 391
Score = 46.1 bits (23), Expect = 0.007
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 231 gggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaattttt 290
|||||| ||||||||||||| ||||| || ||||| || || || |||| ||||||
Sbjct: 226 gggtgttcacattatagaagacgatgcaagattagagcaccatgttgtgatgagattttt 285
Query: 291 gattgccgacactgccacaatgaaactaagaattc 325
|||||| |||| |||||||| ||| ||||| ||||
Sbjct: 286 gattgcagacattgccacaacgaagctaaggattc 320
>gb|BP868217.1|BP868217 BP868217 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-83-J17 5',
mRNA sequence
Length = 385
Score = 46.1 bits (23), Expect = 0.007
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 231 gggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaattttt 290
|||||| ||||||||||||| ||||| || ||||| || || || |||| ||||||
Sbjct: 224 gggtgttcacattatagaagacgatgcaagattagagcaccatgttgtgatgagattttt 283
Query: 291 gattgccgacactgccacaatgaaactaagaattc 325
|||||| |||| |||||||| ||| ||||| ||||
Sbjct: 284 gattgcagacattgccacaacgaagctaaggattc 318
>gb|AY052362.1| Arabidopsis thaliana AT5g22920/MRN17_15 mRNA, complete cds
Length = 1183
Score = 46.1 bits (23), Expect = 0.007
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 231 gggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaattttt 290
|||||| ||||||||||||| ||||| || ||||| || || || |||| ||||||
Sbjct: 227 gggtgttcacattatagaagacgatgcaagattagagcaccatgttgtgatgagattttt 286
Query: 291 gattgccgacactgccacaatgaaactaagaattc 325
|||||| |||| |||||||| ||| ||||| ||||
Sbjct: 287 gattgcagacattgccacaacgaagctaaggattc 321
Score = 44.1 bits (22), Expect = 0.027
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 431 caattgcggtgtttgcatggggaagtacttctgt 464
|||||| ||||| || ||||||||||||||||||
Sbjct: 427 caattgtggtgtatgtatggggaagtacttctgt 460
>gb|BT002635.1| Arabidopsis thaliana At5g22920/MRN17_15 gene, complete cds
Length = 876
Score = 46.1 bits (23), Expect = 0.007
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 231 gggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaattttt 290
|||||| ||||||||||||| ||||| || ||||| || || || |||| ||||||
Sbjct: 76 gggtgttcacattatagaagacgatgcaagattagagcaccatgttgtgatgagattttt 135
Query: 291 gattgccgacactgccacaatgaaactaagaattc 325
|||||| |||| |||||||| ||| ||||| ||||
Sbjct: 136 gattgcagacattgccacaacgaagctaaggattc 170
Score = 44.1 bits (22), Expect = 0.027
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 431 caattgcggtgtttgcatggggaagtacttctgt 464
|||||| ||||| || ||||||||||||||||||
Sbjct: 276 caattgtggtgtatgtatggggaagtacttctgt 309
>gb|AY088138.1| Arabidopsis thaliana clone 41666 mRNA, complete sequence
Length = 1145
Score = 46.1 bits (23), Expect = 0.007
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 231 gggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaattttt 290
|||||| ||||||||||||| ||||| || ||||| || || || |||| ||||||
Sbjct: 227 gggtgttcacattatagaagacgatgcaagattagagcaccatgttgtgatgagattttt 286
Query: 291 gattgccgacactgccacaatgaaactaagaattc 325
|||||| |||| |||||||| ||| ||||| ||||
Sbjct: 287 gattgcagacattgccacaacgaagctaaggattc 321
Score = 44.1 bits (22), Expect = 0.027
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 431 caattgcggtgtttgcatggggaagtacttctgt 464
|||||| ||||| || ||||||||||||||||||
Sbjct: 427 caattgtggtgtatgtatggggaagtacttctgt 460
>gb|DQ059131.1| Arabidopsis thaliana RING finger family protein (At5g22920) mRNA,
complete cds
Length = 876
Score = 46.1 bits (23), Expect = 0.007
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 231 gggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaattttt 290
|||||| ||||||||||||| ||||| || ||||| || || || |||| ||||||
Sbjct: 76 gggtgttcacattatagaagacgatgcaagattagagcaccatgttgtgatgagattttt 135
Query: 291 gattgccgacactgccacaatgaaactaagaattc 325
|||||| |||| |||||||| ||| ||||| ||||
Sbjct: 136 gattgcagacattgccacaacgaagctaaggattc 170
Score = 44.1 bits (22), Expect = 0.027
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 431 caattgcggtgtttgcatggggaagtacttctgt 464
|||||| ||||| || ||||||||||||||||||
Sbjct: 276 caattgtggtgtatgtatggggaagtacttctgt 309
>ref|NM_122198.2| Arabidopsis thaliana ubiquitin-protein ligase/ zinc ion binding
AT5G22920 mRNA, complete cds
Length = 1262
Score = 46.1 bits (23), Expect = 0.007
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 231 gggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaattttt 290
|||||| ||||||||||||| ||||| || ||||| || || || |||| ||||||
Sbjct: 228 gggtgttcacattatagaagacgatgcaagattagagcaccatgttgtgatgagattttt 287
Query: 291 gattgccgacactgccacaatgaaactaagaattc 325
|||||| |||| |||||||| ||| ||||| ||||
Sbjct: 288 gattgcagacattgccacaacgaagctaaggattc 322
Score = 44.1 bits (22), Expect = 0.027
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 431 caattgcggtgtttgcatggggaagtacttctgt 464
|||||| ||||| || ||||||||||||||||||
Sbjct: 428 caattgtggtgtatgtatggggaagtacttctgt 461
>gb|F14116.1|F14116 ATTS5038 Versailles-VB Arabidopsis thaliana cDNA clone VBVXG10,
mRNA sequence
Length = 410
Score = 44.1 bits (22), Expect = 0.027
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 280 atgaaatttttgattgccgacactgccacaatgaaactaagaattc 325
|||| |||||||||||| |||| |||||||| ||| ||||| ||||
Sbjct: 239 atgagatttttgattgcagacattgccacaacgaagctaaggattc 284
>gb|BP829596.1|BP829596 BP829596 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-82-I24 5',
mRNA sequence
Length = 394
Score = 44.1 bits (22), Expect = 0.027
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 280 atgaaatttttgattgccgacactgccacaatgaaactaagaattc 325
|||| |||||||||||| |||| |||||||| ||| ||||| ||||
Sbjct: 285 atgagatttttgattgcagacattgccacaacgaagctaaggattc 330
>gb|BP841725.1|BP841725 BP841725 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-51-O18 5',
mRNA sequence
Length = 392
Score = 44.1 bits (22), Expect = 0.027
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 280 atgaaatttttgattgccgacactgccacaatgaaactaagaattc 325
|||| |||||||||||| |||| |||||||| ||| ||||| ||||
Sbjct: 274 atgagatttttgattgcagacattgccacaacgaagctaaggattc 319
>gb|BP849385.1|BP849385 BP849385 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-08-P11 5',
mRNA sequence
Length = 389
Score = 44.1 bits (22), Expect = 0.027
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 280 atgaaatttttgattgccgacactgccacaatgaaactaagaattc 325
|||| |||||||||||| |||| |||||||| ||| ||||| ||||
Sbjct: 279 atgagatttttgattgcagacattgccacaacgaagctaaggattc 324
>gb|BP849698.1|BP849698 BP849698 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-10-D21 5',
mRNA sequence
Length = 349
Score = 44.1 bits (22), Expect = 0.027
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 280 atgaaatttttgattgccgacactgccacaatgaaactaagaattc 325
|||| |||||||||||| |||| |||||||| ||| ||||| ||||
Sbjct: 274 atgagatttttgattgcagacattgccacaacgaagctaaggattc 319
>gb|BP854359.1|BP854359 BP854359 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-61-G08 5',
mRNA sequence
Length = 369
Score = 44.1 bits (22), Expect = 0.027
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 280 atgaaatttttgattgccgacactgccacaatgaaactaagaattc 325
|||| |||||||||||| |||| |||||||| ||| ||||| ||||
Sbjct: 287 atgagatttttgattgcagacattgccacaacgaagctaaggattc 332
>gb|BP860319.1|BP860319 BP860319 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-43-M01 5',
mRNA sequence
Length = 355
Score = 44.1 bits (22), Expect = 0.027
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 280 atgaaatttttgattgccgacactgccacaatgaaactaagaattc 325
|||| |||||||||||| |||| |||||||| ||| ||||| ||||
Sbjct: 274 atgagatttttgattgcagacattgccacaacgaagctaaggattc 319
>gb|BP865031.1|BP865031 BP865031 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-72-K13 5',
mRNA sequence
Length = 387
Score = 44.1 bits (22), Expect = 0.027
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 280 atgaaatttttgattgccgacactgccacaatgaaactaagaattc 325
|||| |||||||||||| |||| |||||||| ||| ||||| ||||
Sbjct: 276 atgagatttttgattgcagacattgccacaacgaagctaaggattc 321
>gb|BP869042.1|BP869042 BP869042 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-86-I01 5',
mRNA sequence
Length = 350
Score = 44.1 bits (22), Expect = 0.027
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 280 atgaaatttttgattgccgacactgccacaatgaaactaagaattc 325
|||| |||||||||||| |||| |||||||| ||| ||||| ||||
Sbjct: 266 atgagatttttgattgcagacattgccacaacgaagctaaggattc 311
>dbj|AB005243.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRN17
Length = 86065
Score = 44.1 bits (22), Expect = 0.027
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 431 caattgcggtgtttgcatggggaagtacttctgt 464
|||||| ||||| || ||||||||||||||||||
Sbjct: 60295 caattgtggtgtatgtatggggaagtacttctgt 60328
Score = 42.1 bits (21), Expect = 0.11
Identities = 72/89 (80%)
Strand = Plus / Plus
Query: 232 ggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaatttttg 291
||||| ||||||||||||| ||||| || ||||| || || || |||| |||||||
Sbjct: 59799 ggtgttcacattatagaagacgatgcaagattagagcaccatgttgtgatgagatttttg 59858
Query: 292 attgccgacactgccacaatgaaactaag 320
||||| |||| |||||||| ||| |||||
Sbjct: 59859 attgcagacattgccacaacgaagctaag 59887
>gb|CL500839.1|CL500839 SAIL_68_C02.v2 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_68_C02.v2, DNA sequence
Length = 2265
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 81 tctctctctgctctaccgcta 101
|||||||||||||||||||||
Sbjct: 520 tctctctctgctctaccgcta 500
>gb|CW846914.1|CW846914 GT13793.Ds3.05.23.2004.jx62.663 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
GT13793, DNA sequence
Length = 663
Score = 40.1 bits (20), Expect = 0.43
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 312 gaaactaagaattccattaaaatt 335
|||||||||||||||| |||||||
Sbjct: 232 gaaactaagaattccaataaaatt 209
>gb|AF013293.1|IG005I10 Arabidopsis thaliana BAC IG005I10
Length = 111906
Score = 40.1 bits (20), Expect = 0.43
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 312 gaaactaagaattccattaaaatt 335
|||||||||||||||| |||||||
Sbjct: 55836 gaaactaagaattccaataaaatt 55813
>gb|AF195115.1|F5I10 Arabidopsis thaliana BAC F5I10
Length = 111906
Score = 40.1 bits (20), Expect = 0.43
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 312 gaaactaagaattccattaaaatt 335
|||||||||||||||| |||||||
Sbjct: 56071 gaaactaagaattccaataaaatt 56094
>emb|AJ270058.1| Arabidopsis thaliana DNA chromosome 4, short arm
Length = 3052119
Score = 40.1 bits (20), Expect = 0.43
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 312 gaaactaagaattccattaaaatt 335
|||||||||||||||| |||||||
Sbjct: 155552 gaaactaagaattccaataaaatt 155575
>emb|CR384907.1| Arabidopsis thaliana transposon insertion STS GT_5.89797, sequence
tagged site
Length = 299
Score = 40.1 bits (20), Expect = 0.43
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 312 gaaactaagaattccattaaaatt 335
|||||||||||||||| |||||||
Sbjct: 187 gaaactaagaattccaataaaatt 164
>emb|AL161471.2|ATCHRIV1 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 1
Length = 197119
Score = 40.1 bits (20), Expect = 0.43
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 312 gaaactaagaattccattaaaatt 335
|||||||||||||||| |||||||
Sbjct: 155552 gaaactaagaattccaataaaatt 155575
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 40.1 bits (20), Expect = 0.43
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 312 gaaactaagaattccattaaaatt 335
|||||||||||||||| |||||||
Sbjct: 156552 gaaactaagaattccaataaaatt 156575
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 312,648
Number of Sequences: 1013581
Number of extensions: 312648
Number of successful extensions: 22859
Number of sequences better than 0.5: 42
Number of HSP's better than 0.5 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22297
Number of HSP's gapped (non-prelim): 543
length of query: 602
length of database: 908,940,872
effective HSP length: 20
effective length of query: 582
effective length of database: 888,669,252
effective search space: 517205504664
effective search space used: 517205504664
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)