BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750463.2.1
(678 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV828419.1|AV828419 AV828419 RAFL9 Arabidopsis thaliana ... 58 2e-006
gb|AV550921.1|AV550921 AV550921 Arabidopsis thaliana roots ... 58 2e-006
gb|BP803969.1|BP803969 BP803969 RAFL14 Arabidopsis thaliana... 58 2e-006
gb|AF093672.1|AF093672 Arabidopsis thaliana xyloglucan endo... 58 2e-006
gb|AY093183.1| Arabidopsis thaliana putative xyloglucan end... 58 2e-006
gb|BT003385.1| Arabidopsis thaliana putative xyloglucan end... 58 2e-006
ref|NM_118714.3| Arabidopsis thaliana XTR9 (XYLOGLUCAN ENDO... 58 2e-006
gb|R64778.1|R64778 13282 Lambda-PRL2 Arabidopsis thaliana c... 54 3e-005
gb|Z30849.1|Z30849 ATTS2601 Versailles-VB Arabidopsis thali... 52 1e-004
gb|AV552644.1|AV552644 AV552644 Arabidopsis thaliana roots ... 50 5e-004
gb|AV554665.1|AV554665 AV554665 Arabidopsis thaliana roots ... 50 5e-004
gb|CB252139.1|CB252139 34-E015393-019-006-D09-T7R MPIZ-ADIS... 50 5e-004
gb|CB252195.1|CB252195 32-E015391-019-006-O07-T7R MPIZ-ADIS... 50 5e-004
gb|CB253587.1|CB253587 93-E015393-019-006-J23-T7R MPIZ-ADIS... 50 5e-004
gb|CB253619.1|CB253619 94-E010933-019-003-L23-T7R MPIZ-ADIS... 50 5e-004
gb|CB254884.1|CB254884 56-E018440-019-009-P14-T7R MPIZ-ADIS... 50 5e-004
gb|CB254942.1|CB254942 56-E010742-019-001-P19-T7R MPIZ-ADIS... 50 5e-004
gb|CB255202.1|CB255202 48-E010696-019-002-O11-T7R MPIZ-ADIS... 50 5e-004
gb|BP861022.1|BP861022 BP861022 RAFL21 Arabidopsis thaliana... 50 5e-004
gb|U43488.1|ATU43488 Arabidopsis thaliana xyloglucan endotr... 50 5e-004
emb|AX506832.1| Sequence 1527 from Patent WO0216655 50 5e-004
emb|AX651785.1| Sequence 637 from Patent WO03000898 50 5e-004
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 50 5e-004
emb|CQ804820.1| Sequence 1231 from Patent WO2004035798 50 5e-004
emb|AL049480.1|ATF14M19 Arabidopsis thaliana DNA chromosome... 50 5e-004
emb|AL161564.2|ATCHRIV64 Arabidopsis thaliana DNA chromosom... 50 5e-004
ref|NM_118713.2| Arabidopsis thaliana XTR6 (XYLOGLUCAN ENDO... 50 5e-004
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 50 5e-004
gb|CB252657.1|CB252657 21-E010007-019-001-I03-T7R MPIZ-ADIS... 46 0.008
gb|BP846660.1|BP846660 BP846660 RAFL21 Arabidopsis thaliana... 46 0.008
gb|BP854374.1|BP854374 BP854374 RAFL21 Arabidopsis thaliana... 46 0.008
gb|CB255403.1|CB255403 42-E018429-019-008-D11-T7R MPIZ-ADIS... 44 0.031
gb|BH814919.1|BH814919 SALK_067250 Arabidopsis thaliana TDN... 42 0.12
gb|AV825646.1|AV825646 AV825646 RAFL7 Arabidopsis thaliana ... 42 0.12
gb|BP855982.1|BP855982 BP855982 RAFL21 Arabidopsis thaliana... 42 0.12
gb|AY062472.1| Arabidopsis thaliana xyloglucan endo-1, 4-be... 42 0.12
gb|AY093252.1| Arabidopsis thaliana xyloglucan endo-1, 4-be... 42 0.12
gb|BP851177.1|BP851177 BP851177 RAFL21 Arabidopsis thaliana... 40 0.48
>gb|AV828419.1|AV828419 AV828419 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-27-M15 5',
mRNA sequence
Length = 599
Score = 58.0 bits (29), Expect = 2e-006
Identities = 92/113 (81%)
Strand = Plus / Plus
Query: 281 tccggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatc 340
|||||||| || || || ||||||| |||||| |||| || |||||||||||| || ||
Sbjct: 231 tccggctcaggttttcaatccaagaaggagtacttgtttggtaagatcgacatgaagctc 290
Query: 341 aagctggtgccaggcaactccgctggcacggtcaccaccttctacctgtcgtc 393
||||| || | || ||||| |||||||| |||||| ||| |||||| |||||
Sbjct: 291 aagcttgtcgctggaaactctgctggcaccgtcaccgcctactacctatcgtc 343
>gb|AV550921.1|AV550921 AV550921 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ119c06R 5', mRNA sequence
Length = 363
Score = 58.0 bits (29), Expect = 2e-006
Identities = 92/113 (81%)
Strand = Plus / Plus
Query: 281 tccggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatc 340
|||||||| || || || ||||||| |||||| |||| || |||||||||||| || ||
Sbjct: 193 tccggctcaggttttcaatccaagaaggagtacttgtttggtaagatcgacatgaagctc 252
Query: 341 aagctggtgccaggcaactccgctggcacggtcaccaccttctacctgtcgtc 393
||||| || | || ||||| |||||||| |||||| ||| |||||| |||||
Sbjct: 253 aagcttgtcgctggaaactctgctggcaccgtcaccgcctactacctatcgtc 305
>gb|BP803969.1|BP803969 BP803969 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-31-N11 5',
mRNA sequence
Length = 360
Score = 58.0 bits (29), Expect = 2e-006
Identities = 92/113 (81%)
Strand = Plus / Plus
Query: 281 tccggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatc 340
|||||||| || || || ||||||| |||||| |||| || |||||||||||| || ||
Sbjct: 229 tccggctcaggttttcaatccaagaaggagtacttgtttggtaagatcgacatgaagctc 288
Query: 341 aagctggtgccaggcaactccgctggcacggtcaccaccttctacctgtcgtc 393
||||| || | || ||||| |||||||| |||||| ||| |||||| |||||
Sbjct: 289 aagcttgtcgctggaaactctgctggcaccgtcaccgcctactacctatcgtc 341
>gb|AF093672.1|AF093672 Arabidopsis thaliana xyloglucan endotransglycosylase (XTR9) mRNA,
complete cds
Length = 1100
Score = 58.0 bits (29), Expect = 2e-006
Identities = 92/113 (81%)
Strand = Plus / Plus
Query: 281 tccggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatc 340
|||||||| || || || ||||||| |||||| |||| || |||||||||||| || ||
Sbjct: 219 tccggctcaggttttcaatccaagaaggagtacttgtttggtaagatcgacatgaagctc 278
Query: 341 aagctggtgccaggcaactccgctggcacggtcaccaccttctacctgtcgtc 393
||||| || | || ||||| |||||||| |||||| ||| |||||| |||||
Sbjct: 279 aagcttgtcgctggaaactctgctggcaccgtcaccgcctactacctatcgtc 331
>gb|AY093183.1| Arabidopsis thaliana putative xyloglucan endo-1, 4-beta-D-glucanase
(At4g25820) mRNA, complete cds
Length = 1068
Score = 58.0 bits (29), Expect = 2e-006
Identities = 92/113 (81%)
Strand = Plus / Plus
Query: 281 tccggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatc 340
|||||||| || || || ||||||| |||||| |||| || |||||||||||| || ||
Sbjct: 230 tccggctcaggttttcaatccaagaaggagtacttgtttggtaagatcgacatgaagctc 289
Query: 341 aagctggtgccaggcaactccgctggcacggtcaccaccttctacctgtcgtc 393
||||| || | || ||||| |||||||| |||||| ||| |||||| |||||
Sbjct: 290 aagcttgtcgctggaaactctgctggcaccgtcaccgcctactacctatcgtc 342
>gb|BT003385.1| Arabidopsis thaliana putative xyloglucan endo-1, 4-beta-D-glucanase
(At4g25820) mRNA, complete cds
Length = 901
Score = 58.0 bits (29), Expect = 2e-006
Identities = 92/113 (81%)
Strand = Plus / Plus
Query: 281 tccggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatc 340
|||||||| || || || ||||||| |||||| |||| || |||||||||||| || ||
Sbjct: 178 tccggctcaggttttcaatccaagaaggagtacttgtttggtaagatcgacatgaagctc 237
Query: 341 aagctggtgccaggcaactccgctggcacggtcaccaccttctacctgtcgtc 393
||||| || | || ||||| |||||||| |||||| ||| |||||| |||||
Sbjct: 238 aagcttgtcgctggaaactctgctggcaccgtcaccgcctactacctatcgtc 290
>ref|NM_118714.3| Arabidopsis thaliana XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9);
hydrolase, acting on glycosyl bonds / hydrolase,
hydrolyzing O-glycosyl compounds AT4G25820 (XTR9) mRNA,
complete cds
Length = 1089
Score = 58.0 bits (29), Expect = 2e-006
Identities = 92/113 (81%)
Strand = Plus / Plus
Query: 281 tccggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatc 340
|||||||| || || || ||||||| |||||| |||| || |||||||||||| || ||
Sbjct: 230 tccggctcaggttttcaatccaagaaggagtacttgtttggtaagatcgacatgaagctc 289
Query: 341 aagctggtgccaggcaactccgctggcacggtcaccaccttctacctgtcgtc 393
||||| || | || ||||| |||||||| |||||| ||| |||||| |||||
Sbjct: 290 aagcttgtcgctggaaactctgctggcaccgtcaccgcctactacctatcgtc 342
>gb|R64778.1|R64778 13282 Lambda-PRL2 Arabidopsis thaliana cDNA clone 165P23T7, mRNA
sequence
Length = 508
Score = 54.0 bits (27), Expect = 3e-005
Identities = 91/113 (80%)
Strand = Plus / Plus
Query: 281 tccggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatc 340
|||||||| || || || ||||||| |||||| |||| || |||||||||||| || ||
Sbjct: 208 tccggctcaggttttcaatccaagaaggagtacttgtttggtaagatcgacatgaagctc 267
Query: 341 aagctggtgccaggcaactccgctggcacggtcaccaccttctacctgtcgtc 393
||||| || | || ||||| |||||||| |||||| || |||||| |||||
Sbjct: 268 aagcttgtngctggaaactctgctggcaccgtcaccgnctactacctatcgtc 320
>gb|Z30849.1|Z30849 ATTS2601 Versailles-VB Arabidopsis thaliana cDNA clone VBVCC04
similar to Meri 5 protein, mRNA sequence
Length = 306
Score = 52.0 bits (26), Expect = 1e-004
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 284 ggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaag 343
||||| || ||||| ||||||| ||| || ||||||| || |||||||||||||||||
Sbjct: 181 ggctcaggattccaatccaagaacgaatatttgttcggnaaaatcgacatgcagatcaaa 240
Query: 344 ctggtgccaggcaactccgctggcacggtcacc 376
|| || | || ||||||||||| || ||||||
Sbjct: 241 ctcgttgccggaaactccgctggaactgtcacc 273
>gb|AV552644.1|AV552644 AV552644 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ35b10R 5', mRNA sequence
Length = 371
Score = 50.1 bits (25), Expect = 5e-004
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 284 ggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaag 343
||||| || ||||| ||||||| ||| || ||||||| || |||||||||||||||||
Sbjct: 18 ggctcaggattccaatccaagaacgaatatttgttcggtaaaatcgacatgcagatcaaa 77
Query: 344 ctggtgccaggcaactccgctggcacggtcacc 376
|| || | || ||||||||||| || ||||||
Sbjct: 78 ctcgttgccggaaactccgctggaactgtcacc 110
>gb|AV554665.1|AV554665 AV554665 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ98b02R 5', mRNA sequence
Length = 527
Score = 50.1 bits (25), Expect = 5e-004
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 284 ggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaag 343
||||| || ||||| ||||||| ||| || ||||||| || |||||||||||||||||
Sbjct: 181 ggctcaggattccaatccaagaacgaatatttgttcggtaaaatcgacatgcagatcaaa 240
Query: 344 ctggtgccaggcaactccgctggcacggtcacc 376
|| || | || ||||||||||| || ||||||
Sbjct: 241 ctcgttgccggaaactccgctggaactgtcacc 273
>gb|CB252139.1|CB252139 34-E015393-019-006-D09-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768D096Q 5-PRIME, mRNA sequence
Length = 739
Score = 50.1 bits (25), Expect = 5e-004
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 284 ggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaag 343
||||| || ||||| ||||||| ||| || ||||||| || |||||||||||||||||
Sbjct: 203 ggctcaggattccaatccaagaacgaatatttgttcggtaaaatcgacatgcagatcaaa 262
Query: 344 ctggtgccaggcaactccgctggcacggtcacc 376
|| || | || ||||||||||| || ||||||
Sbjct: 263 ctcgttgccggaaactccgctggaactgtcacc 295
>gb|CB252195.1|CB252195 32-E015391-019-006-O07-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768O076Q 5-PRIME, mRNA sequence
Length = 726
Score = 50.1 bits (25), Expect = 5e-004
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 284 ggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaag 343
||||| || ||||| ||||||| ||| || ||||||| || |||||||||||||||||
Sbjct: 89 ggctcaggattccaatccaagaacgaatatttgttcggtaaaatcgacatgcagatcaaa 148
Query: 344 ctggtgccaggcaactccgctggcacggtcacc 376
|| || | || ||||||||||| || ||||||
Sbjct: 149 ctcgttgccggaaactccgctggaactgtcacc 181
>gb|CB253587.1|CB253587 93-E015393-019-006-J23-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768J236Q 5-PRIME, mRNA sequence
Length = 669
Score = 50.1 bits (25), Expect = 5e-004
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 284 ggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaag 343
||||| || ||||| ||||||| ||| || ||||||| || |||||||||||||||||
Sbjct: 211 ggctcaggattccaatccaagaacgaatatttgttcggtaaaatcgacatgcagatcaaa 270
Query: 344 ctggtgccaggcaactccgctggcacggtcacc 376
|| || | || ||||||||||| || ||||||
Sbjct: 271 ctcgttgccggaaactccgctggaactgtcacc 303
>gb|CB253619.1|CB253619 94-E010933-019-003-L23-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768L233Q 5-PRIME, mRNA sequence
Length = 475
Score = 50.1 bits (25), Expect = 5e-004
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 284 ggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaag 343
||||| || ||||| ||||||| ||| || ||||||| || |||||||||||||||||
Sbjct: 69 ggctcaggattccaatccaagaacgaatatttgttcggtaaaatcgacatgcagatcaaa 128
Query: 344 ctggtgccaggcaactccgctggcacggtcacc 376
|| || | || ||||||||||| || ||||||
Sbjct: 129 ctcgttgccggaaactccgctggaactgtcacc 161
>gb|CB254884.1|CB254884 56-E018440-019-009-P14-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768P149Q 5-PRIME, mRNA sequence
Length = 672
Score = 50.1 bits (25), Expect = 5e-004
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 284 ggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaag 343
||||| || ||||| ||||||| ||| || ||||||| || |||||||||||||||||
Sbjct: 205 ggctcaggattccaatccaagaacgaatatttgttcggtaaaatcgacatgcagatcaaa 264
Query: 344 ctggtgccaggcaactccgctggcacggtcacc 376
|| || | || ||||||||||| || ||||||
Sbjct: 265 ctcgttgccggaaactccgctggaactgtcacc 297
>gb|CB254942.1|CB254942 56-E010742-019-001-P19-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768P191Q 5-PRIME, mRNA sequence
Length = 631
Score = 50.1 bits (25), Expect = 5e-004
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 284 ggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaag 343
||||| || ||||| ||||||| ||| || ||||||| || |||||||||||||||||
Sbjct: 189 ggctcaggattccaatccaagaacgaatatttgttcggtaaaatcgacatgcagatcaaa 248
Query: 344 ctggtgccaggcaactccgctggcacggtcacc 376
|| || | || ||||||||||| || ||||||
Sbjct: 249 ctcgttgccggaaactccgctggaactgtcacc 281
>gb|CB255202.1|CB255202 48-E010696-019-002-O11-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768O112Q 5-PRIME, mRNA sequence
Length = 596
Score = 50.1 bits (25), Expect = 5e-004
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 284 ggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaag 343
||||| || ||||| ||||||| ||| || ||||||| || |||||||||||||||||
Sbjct: 202 ggctcaggattccaatccaagaacgaatatttgttcggtaaaatcgacatgcagatcaaa 261
Query: 344 ctggtgccaggcaactccgctggcacggtcacc 376
|| || | || ||||||||||| || ||||||
Sbjct: 262 ctcgttgccggaaactccgctggaactgtcacc 294
>gb|BP861022.1|BP861022 BP861022 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-46-A20 5',
mRNA sequence
Length = 368
Score = 50.1 bits (25), Expect = 5e-004
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 284 ggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaag 343
||||| || ||||| ||||||| ||| || ||||||| || |||||||||||||||||
Sbjct: 218 ggctcaggattccaatccaagaacgaatatttgttcggtaaaatcgacatgcagatcaaa 277
Query: 344 ctggtgccaggcaactccgctggcacggtcacc 376
|| || | || ||||||||||| || ||||||
Sbjct: 278 ctcgttgccggaaactccgctggaactgtcacc 310
>gb|U43488.1|ATU43488 Arabidopsis thaliana xyloglucan endotransglycosylase-related
protein (XTR6) mRNA, complete cds
Length = 885
Score = 50.1 bits (25), Expect = 5e-004
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 284 ggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaag 343
||||| || ||||| ||||||| ||| || ||||||| || |||||||||||||||||
Sbjct: 169 ggctcaggattccaatccaagaacgaatatttgttcggtaaaatcgacatgcagatcaaa 228
Query: 344 ctggtgccaggcaactccgctggcacggtcacc 376
|| || | || ||||||||||| || ||||||
Sbjct: 229 ctcgttgccggaaactccgctggaactgtcacc 261
>emb|AX506832.1| Sequence 1527 from Patent WO0216655
Length = 861
Score = 50.1 bits (25), Expect = 5e-004
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 284 ggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaag 343
||||| || ||||| ||||||| ||| || ||||||| || |||||||||||||||||
Sbjct: 169 ggctcaggattccaatccaagaacgaatatttgttcggtaaaatcgacatgcagatcaaa 228
Query: 344 ctggtgccaggcaactccgctggcacggtcacc 376
|| || | || ||||||||||| || ||||||
Sbjct: 229 ctcgttgccggaaactccgctggaactgtcacc 261
>emb|AX651785.1| Sequence 637 from Patent WO03000898
Length = 860
Score = 50.1 bits (25), Expect = 5e-004
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 284 ggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaag 343
||||| || ||||| ||||||| ||| || ||||||| || |||||||||||||||||
Sbjct: 169 ggctcaggattccaatccaagaacgaatatttgttcggtaaaatcgacatgcagatcaaa 228
Query: 344 ctggtgccaggcaactccgctggcacggtcacc 376
|| || | || ||||||||||| || ||||||
Sbjct: 229 ctcgttgccggaaactccgctggaactgtcacc 261
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 50.1 bits (25), Expect = 5e-004
Identities = 85/105 (80%)
Strand = Plus / Plus
Query: 281 tccggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatc 340
|||||||| || || || ||||||| |||||| |||| || |||||||||||| || ||
Sbjct: 9043301 tccggctcaggttttcaatccaagaaggagtacttgtttggtaagatcgacatgaagctc 9043360
Query: 341 aagctggtgccaggcaactccgctggcacggtcaccaccttctac 385
||||| || | || ||||| |||||||| |||||| ||| ||||
Sbjct: 9043361 aagcttgtcgctggaaactctgctggcaccgtcaccgcctactac 9043405
Score = 50.1 bits (25), Expect = 5e-004
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 284 ggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaag 343
||||| || ||||| ||||||| ||| || ||||||| || |||||||||||||||||
Sbjct: 9041637 ggctcaggattccaatccaagaacgaatatttgttcggtaaaatcgacatgcagatcaaa 9041696
Query: 344 ctggtgccaggcaactccgctggcacggtcacc 376
|| || | || ||||||||||| || ||||||
Sbjct: 9041697 ctcgttgccggaaactccgctggaactgtcacc 9041729
>emb|CQ804820.1| Sequence 1231 from Patent WO2004035798
Length = 861
Score = 50.1 bits (25), Expect = 5e-004
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 284 ggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaag 343
||||| || ||||| ||||||| ||| || ||||||| || |||||||||||||||||
Sbjct: 169 ggctcaggattccaatccaagaacgaatatttgttcggtaaaatcgacatgcagatcaaa 228
Query: 344 ctggtgccaggcaactccgctggcacggtcacc 376
|| || | || ||||||||||| || ||||||
Sbjct: 229 ctcgttgccggaaactccgctggaactgtcacc 261
>emb|AL049480.1|ATF14M19 Arabidopsis thaliana DNA chromosome 4, BAC clone F14M19 (ESSA project)
Length = 91228
Score = 50.1 bits (25), Expect = 5e-004
Identities = 85/105 (80%)
Strand = Plus / Plus
Query: 281 tccggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatc 340
|||||||| || || || ||||||| |||||| |||| || |||||||||||| || ||
Sbjct: 27909 tccggctcaggttttcaatccaagaaggagtacttgtttggtaagatcgacatgaagctc 27968
Query: 341 aagctggtgccaggcaactccgctggcacggtcaccaccttctac 385
||||| || | || ||||| |||||||| |||||| ||| ||||
Sbjct: 27969 aagcttgtcgctggaaactctgctggcaccgtcaccgcctactac 28013
Score = 50.1 bits (25), Expect = 5e-004
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 284 ggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaag 343
||||| || ||||| ||||||| ||| || ||||||| || |||||||||||||||||
Sbjct: 26245 ggctcaggattccaatccaagaacgaatatttgttcggtaaaatcgacatgcagatcaaa 26304
Query: 344 ctggtgccaggcaactccgctggcacggtcacc 376
|| || | || ||||||||||| || ||||||
Sbjct: 26305 ctcgttgccggaaactccgctggaactgtcacc 26337
>emb|AL161564.2|ATCHRIV64 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 64
Length = 196286
Score = 50.1 bits (25), Expect = 5e-004
Identities = 85/105 (80%)
Strand = Plus / Plus
Query: 281 tccggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatc 340
|||||||| || || || ||||||| |||||| |||| || |||||||||||| || ||
Sbjct: 18988 tccggctcaggttttcaatccaagaaggagtacttgtttggtaagatcgacatgaagctc 19047
Query: 341 aagctggtgccaggcaactccgctggcacggtcaccaccttctac 385
||||| || | || ||||| |||||||| |||||| ||| ||||
Sbjct: 19048 aagcttgtcgctggaaactctgctggcaccgtcaccgcctactac 19092
Score = 50.1 bits (25), Expect = 5e-004
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 284 ggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaag 343
||||| || ||||| ||||||| ||| || ||||||| || |||||||||||||||||
Sbjct: 17324 ggctcaggattccaatccaagaacgaatatttgttcggtaaaatcgacatgcagatcaaa 17383
Query: 344 ctggtgccaggcaactccgctggcacggtcacc 376
|| || | || ||||||||||| || ||||||
Sbjct: 17384 ctcgttgccggaaactccgctggaactgtcacc 17416
>ref|NM_118713.2| Arabidopsis thaliana XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6);
hydrolase, acting on glycosyl bonds / hydrolase,
hydrolyzing O-glycosyl compounds AT4G25810 (XTR6) mRNA,
complete cds
Length = 1078
Score = 50.1 bits (25), Expect = 5e-004
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 284 ggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaag 343
||||| || ||||| ||||||| ||| || ||||||| || |||||||||||||||||
Sbjct: 217 ggctcaggattccaatccaagaacgaatatttgttcggtaaaatcgacatgcagatcaaa 276
Query: 344 ctggtgccaggcaactccgctggcacggtcacc 376
|| || | || ||||||||||| || ||||||
Sbjct: 277 ctcgttgccggaaactccgctggaactgtcacc 309
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 50.1 bits (25), Expect = 5e-004
Identities = 85/105 (80%)
Strand = Plus / Plus
Query: 281 tccggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatc 340
|||||||| || || || ||||||| |||||| |||| || |||||||||||| || ||
Sbjct: 13130535 tccggctcaggttttcaatccaagaaggagtacttgtttggtaagatcgacatgaagctc 13130594
Query: 341 aagctggtgccaggcaactccgctggcacggtcaccaccttctac 385
||||| || | || ||||| |||||||| |||||| ||| ||||
Sbjct: 13130595 aagcttgtcgctggaaactctgctggcaccgtcaccgcctactac 13130639
Score = 50.1 bits (25), Expect = 5e-004
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 284 ggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaag 343
||||| || ||||| ||||||| ||| || ||||||| || |||||||||||||||||
Sbjct: 13128871 ggctcaggattccaatccaagaacgaatatttgttcggtaaaatcgacatgcagatcaaa 13128930
Query: 344 ctggtgccaggcaactccgctggcacggtcacc 376
|| || | || ||||||||||| || ||||||
Sbjct: 13128931 ctcgttgccggaaactccgctggaactgtcacc 13128963
>gb|CB252657.1|CB252657 21-E010007-019-001-I03-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768I031Q 5-PRIME, mRNA sequence
Length = 625
Score = 46.1 bits (23), Expect = 0.008
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 284 ggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaag 343
||||| || ||||| ||||||| ||| || ||||||| || |||||||||||||||||
Sbjct: 69 ggctcaggattccaatccaagaacgaatatttgttcggtaaaatcgacatgcagatcaaa 128
Query: 344 ctggtgccaggcaactccgctgg 366
|| || | || |||||||||||
Sbjct: 129 ctcgttgccggaaactccgctgg 151
>gb|BP846660.1|BP846660 BP846660 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-97-M11 5',
mRNA sequence
Length = 408
Score = 46.1 bits (23), Expect = 0.008
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 284 ggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaa 342
||||| || ||||| ||||||| ||| || ||||||| || |||||||||||||||||
Sbjct: 223 ggctcaggattccaatccaagaacgaatatttgttcggtaaaatcgacatgcagatcaa 281
>gb|BP854374.1|BP854374 BP854374 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-61-H03 5',
mRNA sequence
Length = 385
Score = 46.1 bits (23), Expect = 0.008
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 284 ggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaa 342
||||| || ||||| ||||||| ||| || ||||||| || |||||||||||||||||
Sbjct: 218 ggctcaggattccaatccaagaacgaatatttgttcggtaaaatcgacatgcagatcaa 276
>gb|CB255403.1|CB255403 42-E018429-019-008-D11-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768D118Q 5-PRIME, mRNA sequence
Length = 676
Score = 44.1 bits (22), Expect = 0.031
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 284 ggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatca 341
||||| || ||||| ||||||| ||| || ||||||| || ||||||||||||||||
Sbjct: 206 ggctcaggattccaatccaagaacgaatatttgttcggtaaaatcgacatgcagatca 263
>gb|BH814919.1|BH814919 SALK_067250 Arabidopsis thaliana TDNA insertion lines Arabidopsis
thaliana genomic clone SALK_067250, DNA sequence
Length = 165
Score = 42.1 bits (21), Expect = 0.12
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 281 tccggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatc 340
|||||||| || || || ||||||| |||||| |||| || |||||||||||| || ||
Sbjct: 101 tccggctcaggttttcaatccaagaaggagtacttgtttggtaagatcgacatgaagctc 160
Query: 341 aagct 345
|||||
Sbjct: 161 aagct 165
>gb|AV825646.1|AV825646 AV825646 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-12-D17 5',
mRNA sequence
Length = 626
Score = 42.1 bits (21), Expect = 0.12
Identities = 75/93 (80%)
Strand = Plus / Plus
Query: 284 ggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaag 343
||||| || ||||| ||||||| ||| || ||||||| || ||||||||||||||| |
Sbjct: 218 ggctcaggattccaatccaagaacgaatatttgttcggtaaaatcgacatgcagatcgaa 277
Query: 344 ctggtgccaggcaactccgctggcacggtcacc 376
|| || | || ||||||||||| || ||||||
Sbjct: 278 ctcgttgccggaaactccgctggaactgtcacc 310
>gb|BP855982.1|BP855982 BP855982 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-28-H12 5',
mRNA sequence
Length = 403
Score = 42.1 bits (21), Expect = 0.12
Identities = 75/93 (80%)
Strand = Plus / Plus
Query: 284 ggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaag 343
||||| || ||||| ||||||| ||| || ||||||| || ||||| |||||||||||
Sbjct: 216 ggctcaggattccaatccaagaacgaatatttgttcggtaaaatcgagatgcagatcaaa 275
Query: 344 ctggtgccaggcaactccgctggcacggtcacc 376
|| || | || ||||||||||| || ||||||
Sbjct: 276 ctcgttgccggaaactccgctggaactgtcacc 308
>gb|AY062472.1| Arabidopsis thaliana xyloglucan endo-1, 4-beta-D-glucanase (XTR-6)
(At4g25810; F14M19.90) mRNA, complete cds
Length = 1053
Score = 42.1 bits (21), Expect = 0.12
Identities = 75/93 (80%)
Strand = Plus / Plus
Query: 284 ggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaag 343
||||| || ||||| ||||||| ||| || ||||||| || ||||||||||||||| |
Sbjct: 217 ggctcaggattccaatccaagaacgaatatttgttcggtaaaatcgacatgcagatcgaa 276
Query: 344 ctggtgccaggcaactccgctggcacggtcacc 376
|| || | || ||||||||||| || ||||||
Sbjct: 277 ctcgttgccggaaactccgctggaactgtcacc 309
>gb|AY093252.1| Arabidopsis thaliana xyloglucan endo-1, 4-beta-D-glucanase
(At4g25810) mRNA, complete cds
Length = 891
Score = 42.1 bits (21), Expect = 0.12
Identities = 75/93 (80%)
Strand = Plus / Plus
Query: 284 ggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaag 343
||||| || ||||| ||||||| ||| || ||||||| || ||||||||||||||| |
Sbjct: 169 ggctcaggattccaatccaagaacgaatatttgttcggtaaaatcgacatgcagatcgaa 228
Query: 344 ctggtgccaggcaactccgctggcacggtcacc 376
|| || | || ||||||||||| || ||||||
Sbjct: 229 ctcgttgccggaaactccgctggaactgtcacc 261
>gb|BP851177.1|BP851177 BP851177 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-15-I10 5',
mRNA sequence
Length = 415
Score = 40.1 bits (20), Expect = 0.48
Identities = 51/60 (85%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 284 ggctccgggttccagtccaagagcgagtacctgttcggcaaga-tcgacatgcagatcaa 342
||||| || ||||| ||||||| ||| || |||||||||| | ||||||||||||||||
Sbjct: 217 ggctcaggattccaatccaagaacgaatatttgttcggcaaaaatcgacatgcagatcaa 276
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 135,577
Number of Sequences: 1013581
Number of extensions: 135577
Number of successful extensions: 8704
Number of sequences better than 0.5: 38
Number of HSP's better than 0.5 without gapping: 37
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8549
Number of HSP's gapped (non-prelim): 155
length of query: 678
length of database: 908,940,872
effective HSP length: 20
effective length of query: 658
effective length of database: 888,669,252
effective search space: 584744367816
effective search space used: 584744367816
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)