BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2591248.2.1
(1222 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DQ056459.1| Arabidopsis thaliana glycosyl hydrolase fami... 44 0.056
ref|NM_102170.1| Arabidopsis thaliana hydrolase, hydrolyzin... 44 0.056
gb|CL505665.1|CL505665 SAIL_754_A11.v2 SAIL Collection Arab... 42 0.22
>gb|DQ056459.1| Arabidopsis thaliana glycosyl hydrolase family 9 protein (At1g23210)
mRNA, complete cds
Length = 1470
Score = 44.1 bits (22), Expect = 0.056
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 606 agtatgtagtccacctgccgcttggc 631
||||||||||||||||| ||||||||
Sbjct: 1160 agtatgtagtccacctgacgcttggc 1135
>ref|NM_102170.1| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds
AT1G23210 mRNA, complete cds
Length = 1470
Score = 44.1 bits (22), Expect = 0.056
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 606 agtatgtagtccacctgccgcttggc 631
||||||||||||||||| ||||||||
Sbjct: 1160 agtatgtagtccacctgacgcttggc 1135
>gb|CL505665.1|CL505665 SAIL_754_A11.v2 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_754_A11.v2, DNA sequence
Length = 1771
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 672 cacgagacgcgcccgccggcg 692
|||||||||||||||||||||
Sbjct: 1586 cacgagacgcgcccgccggcg 1606
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 293,063
Number of Sequences: 1013581
Number of extensions: 293063
Number of successful extensions: 20717
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20711
Number of HSP's gapped (non-prelim): 6
length of query: 1222
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1202
effective length of database: 888,669,252
effective search space: 1068180440904
effective search space used: 1068180440904
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)