BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521353.2.1
(1279 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF360161.1| Arabidopsis thaliana unknown protein (At1g77... 111 3e-022
gb|AY113887.1| Arabidopsis thaliana unknown protein (At1g77... 111 3e-022
emb|BX817130.1|CNS0AAHW Arabidopsis thaliana Full-length cD... 111 3e-022
emb|AJ633720.1| Arabidopsis thaliana mRNA for UDP-galactose... 111 3e-022
ref|NM_106409.2| Arabidopsis thaliana organic anion transpo... 111 3e-022
emb|BX815047.1|CNS0ABCQ Arabidopsis thaliana Full-length cD... 103 7e-020
emb|AJ551328.1|ATH551328 Arabidopsis thaliana partial mRNA ... 103 7e-020
ref|NM_102035.1| Arabidopsis thaliana organic anion transpo... 103 7e-020
gb|BE522167.1|BE522167 M24B1STM Arabidopsis developing seed... 90 1e-015
gb|AV827416.1|AV827416 AV827416 RAFL9 Arabidopsis thaliana ... 86 2e-014
gb|BP841194.1|BP841194 BP841194 RAFL19 Arabidopsis thaliana... 84 7e-014
gb|BX837030.1|BX837030 BX837030 Arabidopsis thaliana Adult ... 82 3e-013
emb|BX815002.1|CNS0ABHH Arabidopsis thaliana Full-length cD... 80 1e-012
gb|BP844608.1|BP844608 BP844608 RAFL21 Arabidopsis thaliana... 72 3e-010
gb|BP837726.1|BP837726 BP837726 RAFL19 Arabidopsis thaliana... 68 4e-009
gb|BP854749.1|BP854749 BP854749 RAFL21 Arabidopsis thaliana... 68 4e-009
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 66 2e-008
gb|AC013482.2|AC013482 Genomic sequence for Arabidopsis tha... 66 2e-008
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 66 2e-008
gb|BP818022.1|BP818022 BP818022 RAFL19 Arabidopsis thaliana... 64 6e-008
emb|BX532864.1| Arabidopsis thaliana T-DNA flanking sequenc... 60 1e-006
emb|BX532865.1| Arabidopsis thaliana T-DNA flanking sequenc... 60 1e-006
gb|AC010704.6|AC010704 Arabidopsis thaliana chromosome 1 BA... 60 1e-006
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 60 1e-006
emb|AL082615.1|CNS00O0P Arabidopsis thaliana genome survey ... 54 6e-005
gb|BP858754.1|BP858754 BP858754 RAFL21 Arabidopsis thaliana... 52 2e-004
gb|BX834201.1|BX834201 BX834201 Arabidopsis thaliana Adult ... 50 0.001
gb|AV559353.1|AV559353 AV559353 Arabidopsis thaliana green ... 46 0.015
>gb|AF360161.1| Arabidopsis thaliana unknown protein (At1g77610) mRNA, complete cds
Length = 1545
Score = 111 bits (56), Expect = 3e-022
Identities = 290/368 (78%)
Strand = Plus / Minus
Query: 610 atcatggtggcaaagggtgccatgtagtacaccgtgttaatgctgtcaaacttgtatcca 669
|||||||||||||| || ||||| ||||| || ||||| ||||||||||| ||||| |||
Sbjct: 873 atcatggtggcaaaaggcgccatatagtaaacggtgtttatgctgtcaaatttgtaacca 814
Query: 670 tggagtagggactctgccaagatggtctttgtagacgtagccaggcagccaaccatggca 729
|| || || || || || | ||||||||||| || ||||| | || |||| || ||||
Sbjct: 813 tgaagaagagattcggctagaatggtctttgtggaagtagctaaacatccaaacagggca 754
Query: 730 gcacagaaaccgaaaatgttgaagctaagctctgtcaccgaagtcaggagtattccgcca 789
|||||||| || || ||||| || ||||| || ||||| || ||||| || ||||| |||
Sbjct: 753 gcacagaatccaaacatgttaaaactaagttcagtcacagatgtcagaagaattccacca 694
Query: 790 actatagggaccagcgaagcccatatgcgccactcgaaatgcttgctccagactagccac 849
|| ||||| || || || ||||| || ||||| || || | || ||||| || ||||||
Sbjct: 693 acaataggcacgagagacgcccaaatacgccagtcaaagtatttcctccataccagccac 634
Query: 850 tgcagaataactgtggttgcaggagtgaaagatttgattgtctgcatgaaggagactggg 909
|| | | |||||| || || ||||||||||| || || |||||||| || || || ||
Sbjct: 633 tgtaacacaactgtagtagctggagtgaaagacttaatcgtctgcataaacgaaaccgga 574
Query: 910 atgtagcgcaagctgacatttcccagcacaatgtttatgcagaagacgaaggacattgga 969
||||| || | ||||||||||||| |||||||| || || || ||||| |||||||||
Sbjct: 573 atgtaacgaagactgacatttcccaagacaatgttgatacaaaacacgaaagacattgga 514
Query: 970 aatatcct 977
|| |||||
Sbjct: 513 aaaatcct 506
Score = 89.7 bits (45), Expect = 1e-015
Identities = 105/125 (84%)
Strand = Plus / Minus
Query: 1039 atgtaagctccaatggaagagcagatgaagtggacgcaggacacggtgagagggaacttg 1098
|||||||||||||| || || || |||||||| || || || || | || || |||||
Sbjct: 444 atgtaagctccaatcgacgaacatatgaagtgaacacatgaaaccgatagtggaaactta 385
Query: 1099 aaatccagtttctggaagatccacttgttcatgatgatgacagtgacgttgaagccccac 1158
|||||||||||||| |||||||| ||||||||||||||||| || || ||||| ||||||
Sbjct: 384 aaatccagtttctgaaagatccatttgttcatgatgatgacggtaacattgaaaccccac 325
Query: 1159 cactg 1163
|||||
Sbjct: 324 cactg 320
Score = 58.0 bits (29), Expect = 4e-006
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 421 ttaaggttgcctgcaacgttgaacgtcactgctgttgttgaatggatgacgtagaagatg 480
|||||||| || || |||||||| || ||||| ||||| || || ||||| |||||||||
Sbjct: 1062 ttaaggtttccagccacgttgaatgtgactgcagttgtggagtgaatgacatagaagatg 1003
Query: 481 gagaagttaaggcagaa 497
|||||||| || |||||
Sbjct: 1002 gagaagttgagacagaa 986
>gb|AY113887.1| Arabidopsis thaliana unknown protein (At1g77610) mRNA, complete cds
Length = 1042
Score = 111 bits (56), Expect = 3e-022
Identities = 290/368 (78%)
Strand = Plus / Minus
Query: 610 atcatggtggcaaagggtgccatgtagtacaccgtgttaatgctgtcaaacttgtatcca 669
|||||||||||||| || ||||| ||||| || ||||| ||||||||||| ||||| |||
Sbjct: 596 atcatggtggcaaaaggcgccatatagtaaacggtgtttatgctgtcaaatttgtaacca 537
Query: 670 tggagtagggactctgccaagatggtctttgtagacgtagccaggcagccaaccatggca 729
|| || || || || || | ||||||||||| || ||||| | || |||| || ||||
Sbjct: 536 tgaagaagagattcggctagaatggtctttgtggaagtagctaaacatccaaacagggca 477
Query: 730 gcacagaaaccgaaaatgttgaagctaagctctgtcaccgaagtcaggagtattccgcca 789
|||||||| || || ||||| || ||||| || ||||| || ||||| || ||||| |||
Sbjct: 476 gcacagaatccaaacatgttaaaactaagttcagtcacagatgtcagaagaattccacca 417
Query: 790 actatagggaccagcgaagcccatatgcgccactcgaaatgcttgctccagactagccac 849
|| ||||| || || || ||||| || ||||| || || | || ||||| || ||||||
Sbjct: 416 acaataggcacgagagacgcccaaatacgccagtcaaagtatttcctccataccagccac 357
Query: 850 tgcagaataactgtggttgcaggagtgaaagatttgattgtctgcatgaaggagactggg 909
|| | | |||||| || || ||||||||||| || || |||||||| || || || ||
Sbjct: 356 tgtaacacaactgtagtagctggagtgaaagacttaatcgtctgcataaacgaaaccgga 297
Query: 910 atgtagcgcaagctgacatttcccagcacaatgtttatgcagaagacgaaggacattgga 969
||||| || | ||||||||||||| |||||||| || || || ||||| |||||||||
Sbjct: 296 atgtaacgaagactgacatttcccaagacaatgttgatacaaaacacgaaagacattgga 237
Query: 970 aatatcct 977
|| |||||
Sbjct: 236 aaaatcct 229
Score = 89.7 bits (45), Expect = 1e-015
Identities = 105/125 (84%)
Strand = Plus / Minus
Query: 1039 atgtaagctccaatggaagagcagatgaagtggacgcaggacacggtgagagggaacttg 1098
|||||||||||||| || || || |||||||| || || || || | || || |||||
Sbjct: 167 atgtaagctccaatcgacgaacatatgaagtgaacacatgaaaccgatagtggaaactta 108
Query: 1099 aaatccagtttctggaagatccacttgttcatgatgatgacagtgacgttgaagccccac 1158
|||||||||||||| |||||||| ||||||||||||||||| || || ||||| ||||||
Sbjct: 107 aaatccagtttctgaaagatccatttgttcatgatgatgacggtaacattgaaaccccac 48
Query: 1159 cactg 1163
|||||
Sbjct: 47 cactg 43
Score = 58.0 bits (29), Expect = 4e-006
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 421 ttaaggttgcctgcaacgttgaacgtcactgctgttgttgaatggatgacgtagaagatg 480
|||||||| || || |||||||| || ||||| ||||| || || ||||| |||||||||
Sbjct: 785 ttaaggtttccagccacgttgaatgtgactgcagttgtggagtgaatgacatagaagatg 726
Query: 481 gagaagttaaggcagaa 497
|||||||| || |||||
Sbjct: 725 gagaagttgagacagaa 709
>emb|BX817130.1|CNS0AAHW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH87ZG02 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1472
Score = 111 bits (56), Expect = 3e-022
Identities = 290/368 (78%)
Strand = Plus / Minus
Query: 610 atcatggtggcaaagggtgccatgtagtacaccgtgttaatgctgtcaaacttgtatcca 669
|||||||||||||| || ||||| ||||| || ||||| ||||||||||| ||||| |||
Sbjct: 854 atcatggtggcaaaaggcgccatatagtaaacggtgtttatgctgtcaaatttgtaacca 795
Query: 670 tggagtagggactctgccaagatggtctttgtagacgtagccaggcagccaaccatggca 729
|| || || || || || | ||||||||||| || ||||| | || |||| || ||||
Sbjct: 794 tgaagaagagattcggctagaatggtctttgtggaagtagctaaacatccaaacagggca 735
Query: 730 gcacagaaaccgaaaatgttgaagctaagctctgtcaccgaagtcaggagtattccgcca 789
|||||||| || || ||||| || ||||| || ||||| || ||||| || ||||| |||
Sbjct: 734 gcacagaatccaaacatgttaaaactaagttcagtcacagatgtcagaagaattccacca 675
Query: 790 actatagggaccagcgaagcccatatgcgccactcgaaatgcttgctccagactagccac 849
|| ||||| || || || ||||| || ||||| || || | || ||||| || ||||||
Sbjct: 674 acaataggcacgagagacgcccaaatacgccagtcaaagtatttcctccataccagccac 615
Query: 850 tgcagaataactgtggttgcaggagtgaaagatttgattgtctgcatgaaggagactggg 909
|| | | |||||| || || ||||||||||| || || |||||||| || || || ||
Sbjct: 614 tgtaacacaactgtagtagctggagtgaaagacttaatcgtctgcataaacgaaaccgga 555
Query: 910 atgtagcgcaagctgacatttcccagcacaatgtttatgcagaagacgaaggacattgga 969
||||| || | ||||||||||||| |||||||| || || || ||||| |||||||||
Sbjct: 554 atgtaacgaagactgacatttcccaagacaatgttgatacaaaacacgaaagacattgga 495
Query: 970 aatatcct 977
|| |||||
Sbjct: 494 aaaatcct 487
Score = 89.7 bits (45), Expect = 1e-015
Identities = 105/125 (84%)
Strand = Plus / Minus
Query: 1039 atgtaagctccaatggaagagcagatgaagtggacgcaggacacggtgagagggaacttg 1098
|||||||||||||| || || || |||||||| || || || || | || || |||||
Sbjct: 425 atgtaagctccaatcgacgaacatatgaagtgaacacatgaaaccgatagtggaaactta 366
Query: 1099 aaatccagtttctggaagatccacttgttcatgatgatgacagtgacgttgaagccccac 1158
|||||||||||||| |||||||| ||||||||||||||||| || || ||||| ||||||
Sbjct: 365 aaatccagtttctgaaagatccatttgttcatgatgatgacggtaacattgaaaccccac 306
Query: 1159 cactg 1163
|||||
Sbjct: 305 cactg 301
Score = 58.0 bits (29), Expect = 4e-006
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 421 ttaaggttgcctgcaacgttgaacgtcactgctgttgttgaatggatgacgtagaagatg 480
|||||||| || || |||||||| || ||||| ||||| || || ||||| |||||||||
Sbjct: 1043 ttaaggtttccagccacgttgaatgtgactgcagttgtggagtgaatgacatagaagatg 984
Query: 481 gagaagttaaggcagaa 497
|||||||| || |||||
Sbjct: 983 gagaagttgagacagaa 967
>emb|AJ633720.1| Arabidopsis thaliana mRNA for UDP-galactose transporter (udpgalt1
gene)
Length = 1523
Score = 111 bits (56), Expect = 3e-022
Identities = 290/368 (78%)
Strand = Plus / Minus
Query: 610 atcatggtggcaaagggtgccatgtagtacaccgtgttaatgctgtcaaacttgtatcca 669
|||||||||||||| || ||||| ||||| || ||||| ||||||||||| ||||| |||
Sbjct: 847 atcatggtggcaaaaggcgccatatagtaaacggtgtttatgctgtcaaatttgtaacca 788
Query: 670 tggagtagggactctgccaagatggtctttgtagacgtagccaggcagccaaccatggca 729
|| || || || || || | ||||||||||| || ||||| | || |||| || ||||
Sbjct: 787 tgaagaagagattcggctagaatggtctttgtggaagtagctaaacatccaaacagggca 728
Query: 730 gcacagaaaccgaaaatgttgaagctaagctctgtcaccgaagtcaggagtattccgcca 789
|||||||| || || ||||| || ||||| || ||||| || ||||| || ||||| |||
Sbjct: 727 gcacagaatccaaacatgttaaaactaagttcagtcacagatgtcagaagaattccacca 668
Query: 790 actatagggaccagcgaagcccatatgcgccactcgaaatgcttgctccagactagccac 849
|| ||||| || || || ||||| || ||||| || || | || ||||| || ||||||
Sbjct: 667 acaataggcacgagagacgcccaaatacgccagtcaaagtatttcctccataccagccac 608
Query: 850 tgcagaataactgtggttgcaggagtgaaagatttgattgtctgcatgaaggagactggg 909
|| | | |||||| || || ||||||||||| || || |||||||| || || || ||
Sbjct: 607 tgtaacacaactgtagtagctggagtgaaagacttaatcgtctgcataaacgaaaccgga 548
Query: 910 atgtagcgcaagctgacatttcccagcacaatgtttatgcagaagacgaaggacattgga 969
||||| || | ||||||||||||| |||||||| || || || ||||| |||||||||
Sbjct: 547 atgtaacgaagactgacatttcccaagacaatgttgatacaaaacacgaaagacattgga 488
Query: 970 aatatcct 977
|| |||||
Sbjct: 487 aaaatcct 480
Score = 89.7 bits (45), Expect = 1e-015
Identities = 105/125 (84%)
Strand = Plus / Minus
Query: 1039 atgtaagctccaatggaagagcagatgaagtggacgcaggacacggtgagagggaacttg 1098
|||||||||||||| || || || |||||||| || || || || | || || |||||
Sbjct: 418 atgtaagctccaatcgacgaacatatgaagtgaacacatgaaaccgatagtggaaactta 359
Query: 1099 aaatccagtttctggaagatccacttgttcatgatgatgacagtgacgttgaagccccac 1158
|||||||||||||| |||||||| ||||||||||||||||| || || ||||| ||||||
Sbjct: 358 aaatccagtttctgaaagatccatttgttcatgatgatgacggtaacattgaaaccccac 299
Query: 1159 cactg 1163
|||||
Sbjct: 298 cactg 294
Score = 58.0 bits (29), Expect = 4e-006
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 421 ttaaggttgcctgcaacgttgaacgtcactgctgttgttgaatggatgacgtagaagatg 480
|||||||| || || |||||||| || ||||| ||||| || || ||||| |||||||||
Sbjct: 1036 ttaaggtttccagccacgttgaatgtgactgcagttgtggagtgaatgacatagaagatg 977
Query: 481 gagaagttaaggcagaa 497
|||||||| || |||||
Sbjct: 976 gagaagttgagacagaa 960
>ref|NM_106409.2| Arabidopsis thaliana organic anion transporter AT1G77610 mRNA,
complete cds
Length = 1575
Score = 111 bits (56), Expect = 3e-022
Identities = 290/368 (78%)
Strand = Plus / Minus
Query: 610 atcatggtggcaaagggtgccatgtagtacaccgtgttaatgctgtcaaacttgtatcca 669
|||||||||||||| || ||||| ||||| || ||||| ||||||||||| ||||| |||
Sbjct: 873 atcatggtggcaaaaggcgccatatagtaaacggtgtttatgctgtcaaatttgtaacca 814
Query: 670 tggagtagggactctgccaagatggtctttgtagacgtagccaggcagccaaccatggca 729
|| || || || || || | ||||||||||| || ||||| | || |||| || ||||
Sbjct: 813 tgaagaagagattcggctagaatggtctttgtggaagtagctaaacatccaaacagggca 754
Query: 730 gcacagaaaccgaaaatgttgaagctaagctctgtcaccgaagtcaggagtattccgcca 789
|||||||| || || ||||| || ||||| || ||||| || ||||| || ||||| |||
Sbjct: 753 gcacagaatccaaacatgttaaaactaagttcagtcacagatgtcagaagaattccacca 694
Query: 790 actatagggaccagcgaagcccatatgcgccactcgaaatgcttgctccagactagccac 849
|| ||||| || || || ||||| || ||||| || || | || ||||| || ||||||
Sbjct: 693 acaataggcacgagagacgcccaaatacgccagtcaaagtatttcctccataccagccac 634
Query: 850 tgcagaataactgtggttgcaggagtgaaagatttgattgtctgcatgaaggagactggg 909
|| | | |||||| || || ||||||||||| || || |||||||| || || || ||
Sbjct: 633 tgtaacacaactgtagtagctggagtgaaagacttaatcgtctgcataaacgaaaccgga 574
Query: 910 atgtagcgcaagctgacatttcccagcacaatgtttatgcagaagacgaaggacattgga 969
||||| || | ||||||||||||| |||||||| || || || ||||| |||||||||
Sbjct: 573 atgtaacgaagactgacatttcccaagacaatgttgatacaaaacacgaaagacattgga 514
Query: 970 aatatcct 977
|| |||||
Sbjct: 513 aaaatcct 506
Score = 89.7 bits (45), Expect = 1e-015
Identities = 105/125 (84%)
Strand = Plus / Minus
Query: 1039 atgtaagctccaatggaagagcagatgaagtggacgcaggacacggtgagagggaacttg 1098
|||||||||||||| || || || |||||||| || || || || | || || |||||
Sbjct: 444 atgtaagctccaatcgacgaacatatgaagtgaacacatgaaaccgatagtggaaactta 385
Query: 1099 aaatccagtttctggaagatccacttgttcatgatgatgacagtgacgttgaagccccac 1158
|||||||||||||| |||||||| ||||||||||||||||| || || ||||| ||||||
Sbjct: 384 aaatccagtttctgaaagatccatttgttcatgatgatgacggtaacattgaaaccccac 325
Query: 1159 cactg 1163
|||||
Sbjct: 324 cactg 320
Score = 58.0 bits (29), Expect = 4e-006
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 421 ttaaggttgcctgcaacgttgaacgtcactgctgttgttgaatggatgacgtagaagatg 480
|||||||| || || |||||||| || ||||| ||||| || || ||||| |||||||||
Sbjct: 1062 ttaaggtttccagccacgttgaatgtgactgcagttgtggagtgaatgacatagaagatg 1003
Query: 481 gagaagttaaggcagaa 497
|||||||| || |||||
Sbjct: 1002 gagaagttgagacagaa 986
>emb|BX815047.1|CNS0ABCQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS28ZH09 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1448
Score = 103 bits (52), Expect = 7e-020
Identities = 289/368 (78%)
Strand = Plus / Minus
Query: 610 atcatggtggcaaagggtgccatgtagtacaccgtgttaatgctgtcaaacttgtatcca 669
|||||||||||||| || ||||| ||||| || ||||| ||||||||||| ||||| |||
Sbjct: 816 atcatggtggcaaaaggcgccatatagtaaacggtgtttatgctgtcaaatttgtaacca 757
Query: 670 tggagtagggactctgccaagatggtctttgtagacgtagccaggcagccaaccatggca 729
|| || || || || || | ||||||||||| || ||||| | || |||| || ||||
Sbjct: 756 tgaagaagagattcggctagaatggtctttgtggaagtagctaaacatccaaacagggca 697
Query: 730 gcacagaaaccgaaaatgttgaagctaagctctgtcaccgaagtcaggagtattccgcca 789
|||||||| || || |||| || |||||||| ||||| || ||||| || ||||| |||
Sbjct: 696 gcacagaatccaaacatgtcaaaactaagctcagtcacagatgtcagaagaattccacca 637
Query: 790 actatagggaccagcgaagcccatatgcgccactcgaaatgcttgctccagactagccac 849
|| ||||| || || || ||||| || ||||| || || | | ||||| || ||||||
Sbjct: 636 acaataggcacgagagacgcccaaatacgccagtcaaagtatctcctccataccagccac 577
Query: 850 tgcagaataactgtggttgcaggagtgaaagatttgattgtctgcatgaaggagactggg 909
|| | | |||||| || || ||||||||||| || || |||||||| || || || ||
Sbjct: 576 tgtaacacaactgtagtagctggagtgaaagacttaatcgtctgcataaacgaaaccgga 517
Query: 910 atgtagcgcaagctgacatttcccagcacaatgtttatgcagaagacgaaggacattgga 969
||||| || | ||||||||||||| |||||||| || || || ||||| |||||||||
Sbjct: 516 atgtaacgaagactgacatttcccaagacaatgttgatacaaaacacgaaagacattgga 457
Query: 970 aatatcct 977
|| |||||
Sbjct: 456 aaaatcct 449
Score = 65.9 bits (33), Expect = 2e-008
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 1099 aaatccagtttctggaagatccacttgttcatgatgatgacagtgacgttgaagccccac 1158
||||||||| |||| |||| ||| ||||||||||||||||| || || ||||| ||||||
Sbjct: 327 aaatccagtctctgaaagacccatttgttcatgatgatgacggtaacattgaaaccccac 268
Query: 1159 cactg 1163
|||||
Sbjct: 267 cactg 263
Score = 50.1 bits (25), Expect = 0.001
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 421 ttaaggttgcctgcaacgttgaacgtcactgctgttgttgaatggatgacgtagaagatg 480
|||||||| || || |||||||| || ||||| ||||| || || || || |||||||||
Sbjct: 1006 ttaaggtttccagccacgttgaatgtgactgcagttgtggagtgaataacatagaagatg 947
Query: 481 gagaagttaaggcagaa 497
|||||||| || |||||
Sbjct: 946 gagaagttgagacagaa 930
>emb|AJ551328.1|ATH551328 Arabidopsis thaliana partial mRNA for GONST5 Golgi Nucleotide sugar
transporter (At1g21870 gene)
Length = 1026
Score = 103 bits (52), Expect = 7e-020
Identities = 289/368 (78%)
Strand = Plus / Minus
Query: 610 atcatggtggcaaagggtgccatgtagtacaccgtgttaatgctgtcaaacttgtatcca 669
|||||||| || || || ||||| ||||| |||||||| ||||||||||| |||||||||
Sbjct: 614 atcatggtcgcgaaaggcgccatatagtataccgtgtttatgctgtcaaatttgtatcca 555
Query: 670 tggagtagggactctgccaagatggtctttgtagacgtagccaggcagccaaccatggca 729
|| || || || ||||| | |||||||||||||| ||||| | || |||| || |||
Sbjct: 554 tgaagaagagattctgcaagaatggtctttgtagaggtagctaaacatccaaacaaagca 495
Query: 730 gcacagaaaccgaaaatgttgaagctaagctctgtcaccgaagtcaggagtattccgcca 789
|||||||| || || | || |||||||| ||||| | ||||| || || || || |||
Sbjct: 494 gcacagaatccaaacacattaaagctaagttctgtaatagaagtaagaagaatccctcca 435
Query: 790 actatagggaccagcgaagcccatatgcgccactcgaaatgcttgctccagactagccac 849
|| ||||| |||| || ||||| || ||||| || |||| || ||||| || | ||||
Sbjct: 434 acaataggcaccaatgacgcccaaatacgccaatcaaaatatttcctccataccaaccac 375
Query: 850 tgcagaataactgtggttgcaggagtgaaagatttgattgtctgcatgaaggagactggg 909
|| | | |||||| ||||||||||| ||||||||||| |||||||| || ||||| ||
Sbjct: 374 tgtaacacaactgttgttgcaggagttaaagatttgatagtctgcataaaagagacagga 315
Query: 910 atgtagcgcaagctgacatttcccagcacaatgtttatgcagaagacgaaggacattgga 969
||||| | | || | ||| |||| ||||||||| || ||||| || || |||||||||
Sbjct: 314 atgtatctaagactaatattccccaacacaatgttgatacagaacacaaatgacattgga 255
Query: 970 aatatcct 977
|| |||||
Sbjct: 254 aaaatcct 247
Score = 87.7 bits (44), Expect = 4e-015
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 1093 aacttgaaatccagtttctggaagatccacttgttcatgatgatgacagtgacgttgaag 1152
|||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||| ||
Sbjct: 131 aacttgaaatccagtttctgaaagatccatttgttcatgatgataacagtaacgttaaaa 72
Query: 1153 ccccacca 1160
||||||||
Sbjct: 71 ccccacca 64
Score = 65.9 bits (33), Expect = 2e-008
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 421 ttaaggttgcctgcaacgttgaacgtcactgctgttgttgaatggatgacgtagaagatg 480
|||||||| || || || ||||| || ||||||||||| || || ||||| |||||||||
Sbjct: 803 ttaaggtttccagctacattgaatgtgactgctgttgtggattgaatgacatagaagatg 744
Query: 481 gagaagttaaggcagaa 497
||||||||||| |||||
Sbjct: 743 gagaagttaagacagaa 727
>ref|NM_102035.1| Arabidopsis thaliana organic anion transporter AT1G21870 mRNA,
complete cds
Length = 1026
Score = 103 bits (52), Expect = 7e-020
Identities = 289/368 (78%)
Strand = Plus / Minus
Query: 610 atcatggtggcaaagggtgccatgtagtacaccgtgttaatgctgtcaaacttgtatcca 669
|||||||| || || || ||||| ||||| |||||||| ||||||||||| |||||||||
Sbjct: 614 atcatggtcgcgaaaggcgccatatagtataccgtgtttatgctgtcaaatttgtatcca 555
Query: 670 tggagtagggactctgccaagatggtctttgtagacgtagccaggcagccaaccatggca 729
|| || || || ||||| | |||||||||||||| ||||| | || |||| || |||
Sbjct: 554 tgaagaagagattctgcaagaatggtctttgtagaggtagctaaacatccaaacaaagca 495
Query: 730 gcacagaaaccgaaaatgttgaagctaagctctgtcaccgaagtcaggagtattccgcca 789
|||||||| || || | || |||||||| ||||| | ||||| || || || || |||
Sbjct: 494 gcacagaatccaaacacattaaagctaagttctgtaatagaagtaagaagaatccctcca 435
Query: 790 actatagggaccagcgaagcccatatgcgccactcgaaatgcttgctccagactagccac 849
|| ||||| |||| || ||||| || ||||| || |||| || ||||| || | ||||
Sbjct: 434 acaataggcaccaatgacgcccaaatacgccaatcaaaatatttcctccataccaaccac 375
Query: 850 tgcagaataactgtggttgcaggagtgaaagatttgattgtctgcatgaaggagactggg 909
|| | | |||||| ||||||||||| ||||||||||| |||||||| || ||||| ||
Sbjct: 374 tgtaacacaactgttgttgcaggagttaaagatttgatagtctgcataaaagagacagga 315
Query: 910 atgtagcgcaagctgacatttcccagcacaatgtttatgcagaagacgaaggacattgga 969
||||| | | || | ||| |||| ||||||||| || ||||| || || |||||||||
Sbjct: 314 atgtatctaagactaatattccccaacacaatgttgatacagaacacaaatgacattgga 255
Query: 970 aatatcct 977
|| |||||
Sbjct: 254 aaaatcct 247
Score = 87.7 bits (44), Expect = 4e-015
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 1093 aacttgaaatccagtttctggaagatccacttgttcatgatgatgacagtgacgttgaag 1152
|||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||| ||
Sbjct: 131 aacttgaaatccagtttctgaaagatccatttgttcatgatgataacagtaacgttaaaa 72
Query: 1153 ccccacca 1160
||||||||
Sbjct: 71 ccccacca 64
Score = 65.9 bits (33), Expect = 2e-008
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 421 ttaaggttgcctgcaacgttgaacgtcactgctgttgttgaatggatgacgtagaagatg 480
|||||||| || || || ||||| || ||||||||||| || || ||||| |||||||||
Sbjct: 803 ttaaggtttccagctacattgaatgtgactgctgttgtggattgaatgacatagaagatg 744
Query: 481 gagaagttaaggcagaa 497
||||||||||| |||||
Sbjct: 743 gagaagttaagacagaa 727
>gb|BE522167.1|BE522167 M24B1STM Arabidopsis developing seed Arabidopsis thaliana cDNA clone
M24B1 5', mRNA sequence
Length = 391
Score = 89.7 bits (45), Expect = 1e-015
Identities = 105/125 (84%)
Strand = Plus / Minus
Query: 1039 atgtaagctccaatggaagagcagatgaagtggacgcaggacacggtgagagggaacttg 1098
|||||||||||||| || || || |||||||| || || || || | || || |||||
Sbjct: 345 atgtaagctccaatcgacgaacatatgaagtgaacacatgaaaccgatagtggaaactta 286
Query: 1099 aaatccagtttctggaagatccacttgttcatgatgatgacagtgacgttgaagccccac 1158
|||||||||||||| |||||||| ||||||||||||||||| || || ||||| ||||||
Sbjct: 285 aaatccagtttctgaaagatccatttgttcatgatgatgacggtaacattgaaaccccac 226
Query: 1159 cactg 1163
|||||
Sbjct: 225 cactg 221
>gb|AV827416.1|AV827416 AV827416 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-15-D11 5', mRNA
sequence
Length = 573
Score = 85.7 bits (43), Expect = 2e-014
Identities = 64/71 (90%)
Strand = Plus / Minus
Query: 1093 aacttgaaatccagtttctggaagatccacttgttcatgatgatgacagtgacgttgaag 1152
||||| |||||||||||||| |||||||| ||||||||||||||||| || || |||||
Sbjct: 391 aacttaaaatccagtttctgaaagatccatttgttcatgatgatgacggtaacattgaaa 332
Query: 1153 ccccaccactg 1163
|||||||||||
Sbjct: 331 ccccaccactg 321
>gb|BP841194.1|BP841194 BP841194 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-32-H13 5',
mRNA sequence
Length = 388
Score = 83.8 bits (42), Expect = 7e-014
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 1094 acttgaaatccagtttctggaagatccacttgttcatgatgatgacagtgacgttgaagc 1153
|||| |||||||||||||| |||||||| ||||||||||||||||| || || ||||| |
Sbjct: 388 acttaaaatccagtttctgaaagatccatttgttcatgatgatgacggtaacattgaaac 329
Query: 1154 cccaccactg 1163
||||||||||
Sbjct: 328 cccaccactg 319
>gb|BX837030.1|BX837030 BX837030 Arabidopsis thaliana Adult vegetative tissue Col-0
Arabidopsis thaliana cDNA clone GSLTLS36ZC06 5PRIM, mRNA
sequence
Length = 938
Score = 81.8 bits (41), Expect = 3e-013
Identities = 59/65 (90%)
Strand = Plus / Minus
Query: 1099 aaatccagtttctggaagatccacttgttcatgatgatgacagtgacgttgaagccccac 1158
|||||||||||||| |||||||| ||||||||||||||||| || || ||||| ||||||
Sbjct: 364 aaatccagtttctgaaagatccatttgttcatgatgatgacggtaacattgaaaccccac 305
Query: 1159 cactg 1163
|||||
Sbjct: 304 cactg 300
Score = 79.8 bits (40), Expect = 1e-012
Identities = 263/336 (78%), Gaps = 1/336 (0%)
Strand = Plus / Minus
Query: 643 gtgttaatgctgtcaaacttgtatccatggagtagggactctgccaagatggtctttgta 702
||||| ||||||||||| ||||| ||||| || || ||||| || | |||||||||||
Sbjct: 821 gtgtttatgctgtcaaatttgtaaccatgaagaagagactcggctagaatggtctttgtg 762
Query: 703 gacgtagccaggcagccaaccatggcagcacagaaaccgaaaatgttgaagctaagctct 762
|| ||||| | || |||| | |||||||||||| || || ||||| || ||||||||
Sbjct: 761 gaagtagctaaacatccaaaaagggcagcacagaatccaaacatgttaaaactaagctca 702
Query: 763 gtcaccgaagtcaggagtattccgccaac-tatagggaccagcgaagcccatatgcgcca 821
||||| || ||||| || ||||| ||||| ||||| || || || ||||| || |||||
Sbjct: 701 gtcacagatgtcagaagaattccaccaacaaataggcacgagagacgcccaaatacgcca 642
Query: 822 ctcgaaatgcttgctccagactagccactgcagaataactgtggttgcaggagtgaaaga 881
|| || | || ||||| || |||||||| | | |||||| || || |||||||||||
Sbjct: 641 gtcaaagtatttcctccataccagccactgtaacacaactgtagtagctggagtgaaaga 582
Query: 882 tttgattgtctgcatgaaggagactgggatgtagcgcaagctgacatttcccagcacaat 941
|| || |||||||| || || || || ||||| || | ||||||||||||| |||||
Sbjct: 581 cttaatcgtctgcataaacgaaaccggaatgtaacgaagactgacatttcccaagacaat 522
Query: 942 gtttatgcagaagacgaaggacattggaaatatcct 977
||| || || || ||||| ||||||||||| |||||
Sbjct: 521 gttgatacaaaacacgaaagacattggaaaaatcct 486
>emb|BX815002.1|CNS0ABHH Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS23ZC01 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1491
Score = 79.8 bits (40), Expect = 1e-012
Identities = 287/368 (77%), Gaps = 1/368 (0%)
Strand = Plus / Minus
Query: 610 atcatggtggcaaagggtgccatgtagtacaccgtgttaatgctgtcaaacttgtatcca 669
|||||||||||||| || ||||| ||||| || ||||| ||||||||||| || || |||
Sbjct: 853 atcatggtggcaaaaggcgccatatagtaaacggtgtttatgctgtcaaatttttaacca 794
Query: 670 tggagtagggactctgccaagatggtctttgtagacgtagccaggcagccaaccatggca 729
|| || || || || || | ||||||||||| || ||||| | || |||| || ||||
Sbjct: 793 tgaagaagagattcggctagaatggtctttgtggaagtagctaaacatccaaacagggca 734
Query: 730 gcacagaaaccgaaaatgttgaagctaagctctgtcaccgaagtcaggagtattccgcca 789
|||||||| || || |||| || ||||| || ||||| || ||||| || |||| |||
Sbjct: 733 gcacagaatccaaacatgtcaaaactaagttcagtcacagatgtcagaagatttccacca 674
Query: 790 actatagggaccagcgaagcccatatgcgccactcgaaatgcttgctccagactagccac 849
|| ||||| || || || ||||| || ||||| || ||| || ||||| || ||||||
Sbjct: 673 acaataggcacgagagacgcccaaatacgccagtc-aaagaattcctccataccagccac 615
Query: 850 tgcagaataactgtggttgcaggagtgaaagatttgattgtctgcatgaaggagactggg 909
|| | | |||||| || || ||||||||||| || || |||||||| || || || ||
Sbjct: 614 tgtaacacaactgtagtagctggagtgaaagacttaatcgtctgcataaacgaaaccgga 555
Query: 910 atgtagcgcaagctgacatttcccagcacaatgtttatgcagaagacgaaggacattgga 969
||||| || | ||||||||||||| |||||||| || || || ||||| |||||||||
Sbjct: 554 atgtaacgaagactgacatttcccaagacaatgttgatacaaaacacgaaagacattgga 495
Query: 970 aatatcct 977
|| |||||
Sbjct: 494 aaaatcct 487
Score = 52.0 bits (26), Expect = 2e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 436 acgttgaacgtcactgctgttgttgaatggatgacgtagaagatggagaagttaaggcag 495
|||||||| || ||||| ||||| || || ||||| ||||||||||||||||| || |||
Sbjct: 1030 acgttgaatgtgactgcagttgtggagtgaatgacatagaagatggagaagttgagacag 971
Query: 496 aa 497
||
Sbjct: 970 aa 969
Score = 50.1 bits (25), Expect = 0.001
Identities = 56/65 (86%), Gaps = 1/65 (1%)
Strand = Plus / Minus
Query: 1099 aaatccagtttctggaagatccacttgttcatgatgatgacagtgacgttgaagccccac 1158
||||||||| |||| |||| | | ||||||||||||||||| || || ||||| ||||||
Sbjct: 361 aaatccagtctctgaaagaccaatttgttcatgatgatgacggtaacattgaa-ccccac 303
Query: 1159 cactg 1163
|||||
Sbjct: 302 cactg 298
>gb|BP844608.1|BP844608 BP844608 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-90-P12 5',
mRNA sequence
Length = 408
Score = 71.9 bits (36), Expect = 3e-010
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 1101 atccagtttctggaagatccacttgttcatgatgatgacagtgacgttgaagccccacca 1160
|||||||||||| |||||||| |||||||||||||| || ||||| ||||| ||||||||
Sbjct: 341 atccagtttctgaaagatccatttgttcatgatgattacggtgacattgaaaccccacca 282
>gb|BP837726.1|BP837726 BP837726 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-21-K21 5',
mRNA sequence
Length = 380
Score = 67.9 bits (34), Expect = 4e-009
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 1106 gtttctggaagatccacttgttcatgatgatgacagtgacgttgaagccccaccactg 1163
||||||| |||||||| ||||||||||||||||| || || ||||| |||||||||||
Sbjct: 377 gtttctgaaagatccatttgttcatgatgatgacggtaacattgaaaccccaccactg 320
>gb|BP854749.1|BP854749 BP854749 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-24-F01 5',
mRNA sequence
Length = 380
Score = 67.9 bits (34), Expect = 4e-009
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 1114 aagatccacttgttcatgatgatgacagtgacgttgaagccccaccactg 1163
|||||||| ||||||||||||||||| ||||| ||||| |||||||||||
Sbjct: 370 aagatccatttgttcatgatgatgacggtgacattgaaaccccaccactg 321
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 65.9 bits (33), Expect = 2e-008
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 421 ttaaggttgcctgcaacgttgaacgtcactgctgttgttgaatggatgacgtagaagatg 480
|||||||| || || || ||||| || ||||||||||| || || ||||| |||||||||
Sbjct: 7679197 ttaaggtttccagctacattgaatgtgactgctgttgtggattgaatgacatagaagatg 7679138
Query: 481 gagaagttaaggcagaa 497
||||||||||| |||||
Sbjct: 7679137 gagaagttaagacagaa 7679121
Score = 60.0 bits (30), Expect = 1e-006
Identities = 96/118 (81%)
Strand = Plus / Minus
Query: 860 ctgtggttgcaggagtgaaagatttgattgtctgcatgaaggagactgggatgtagcgca 919
|||| ||||||||||| ||||||||||| |||||||| || ||||| || ||||| | |
Sbjct: 7678481 ctgttgttgcaggagttaaagatttgatagtctgcataaaagagacaggaatgtatctaa 7678422
Query: 920 agctgacatttcccagcacaatgtttatgcagaagacgaaggacattggaaatatcct 977
|| | ||| |||| ||||||||| || ||||| || || ||||||||||| |||||
Sbjct: 7678421 gactaatattccccaacacaatgttgatacagaacacaaatgacattggaaaaatcct 7678364
Score = 54.0 bits (27), Expect = 6e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 1114 aagatccacttgttcatgatgatgacagtgacgttgaagccccacca 1160
|||||||| |||||||||||||| ||||| ||||| || ||||||||
Sbjct: 7678131 aagatccatttgttcatgatgataacagtaacgttaaaaccccacca 7678085
Score = 46.1 bits (23), Expect = 0.015
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 652 ctgtcaaacttgtatccatggagtagggactctgccaagatggtctttgtagacgtagc 710
|||||||| ||||||||||| || || || ||||| | |||||||||||||| |||||
Sbjct: 7678784 ctgtcaaatttgtatccatgaagaagagattctgcaagaatggtctttgtagaggtagc 7678726
>gb|AC013482.2|AC013482 Genomic sequence for Arabidopsis thaliana BAC T26F17 from chromosome I,
complete sequence
Length = 82875
Score = 65.9 bits (33), Expect = 2e-008
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 421 ttaaggttgcctgcaacgttgaacgtcactgctgttgttgaatggatgacgtagaagatg 480
|||||||| || || || ||||| || ||||||||||| || || ||||| |||||||||
Sbjct: 25166 ttaaggtttccagctacattgaatgtgactgctgttgtggattgaatgacatagaagatg 25107
Query: 481 gagaagttaaggcagaa 497
||||||||||| |||||
Sbjct: 25106 gagaagttaagacagaa 25090
Score = 60.0 bits (30), Expect = 1e-006
Identities = 96/118 (81%)
Strand = Plus / Minus
Query: 860 ctgtggttgcaggagtgaaagatttgattgtctgcatgaaggagactgggatgtagcgca 919
|||| ||||||||||| ||||||||||| |||||||| || ||||| || ||||| | |
Sbjct: 24450 ctgttgttgcaggagttaaagatttgatagtctgcataaaagagacaggaatgtatctaa 24391
Query: 920 agctgacatttcccagcacaatgtttatgcagaagacgaaggacattggaaatatcct 977
|| | ||| |||| ||||||||| || ||||| || || ||||||||||| |||||
Sbjct: 24390 gactaatattccccaacacaatgttgatacagaacacaaatgacattggaaaaatcct 24333
Score = 54.0 bits (27), Expect = 6e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 1114 aagatccacttgttcatgatgatgacagtgacgttgaagccccacca 1160
|||||||| |||||||||||||| ||||| ||||| || ||||||||
Sbjct: 24100 aagatccatttgttcatgatgataacagtaacgttaaaaccccacca 24054
Score = 46.1 bits (23), Expect = 0.015
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 652 ctgtcaaacttgtatccatggagtagggactctgccaagatggtctttgtagacgtagc 710
|||||||| ||||||||||| || || || ||||| | |||||||||||||| |||||
Sbjct: 24753 ctgtcaaatttgtatccatgaagaagagattctgcaagaatggtctttgtagaggtagc 24695
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 65.9 bits (33), Expect = 2e-008
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 421 ttaaggttgcctgcaacgttgaacgtcactgctgttgttgaatggatgacgtagaagatg 480
|||||||| || || || ||||| || ||||||||||| || || ||||| |||||||||
Sbjct: 7679372 ttaaggtttccagctacattgaatgtgactgctgttgtggattgaatgacatagaagatg 7679313
Query: 481 gagaagttaaggcagaa 497
||||||||||| |||||
Sbjct: 7679312 gagaagttaagacagaa 7679296
Score = 60.0 bits (30), Expect = 1e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 1114 aagatccacttgttcatgatgatgacagtgacgttgaagccccaccactg 1163
|||||||| ||||||||||||||||| || || ||||| |||||||||||
Sbjct: 29170474 aagatccatttgttcatgatgatgacggtaacattgaaaccccaccactg 29170425
Score = 60.0 bits (30), Expect = 1e-006
Identities = 96/118 (81%)
Strand = Plus / Minus
Query: 860 ctgtggttgcaggagtgaaagatttgattgtctgcatgaaggagactgggatgtagcgca 919
|||| ||||||||||| ||||||||||| |||||||| || ||||| || ||||| | |
Sbjct: 7678656 ctgttgttgcaggagttaaagatttgatagtctgcataaaagagacaggaatgtatctaa 7678597
Query: 920 agctgacatttcccagcacaatgtttatgcagaagacgaaggacattggaaatatcct 977
|| | ||| |||| ||||||||| || ||||| || || ||||||||||| |||||
Sbjct: 7678596 gactaatattccccaacacaatgttgatacagaacacaaatgacattggaaaaatcct 7678539
Score = 58.0 bits (29), Expect = 4e-006
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 421 ttaaggttgcctgcaacgttgaacgtcactgctgttgttgaatggatgacgtagaagatg 480
|||||||| || || |||||||| || ||||| ||||| || || ||||| |||||||||
Sbjct: 29171762 ttaaggtttccagccacgttgaatgtgactgcagttgtggagtgaatgacatagaagatg 29171703
Query: 481 gagaagttaaggcagaa 497
|||||||| || |||||
Sbjct: 29171702 gagaagttgagacagaa 29171686
Score = 54.0 bits (27), Expect = 6e-005
Identities = 87/107 (81%)
Strand = Plus / Minus
Query: 871 ggagtgaaagatttgattgtctgcatgaaggagactgggatgtagcgcaagctgacattt 930
||||||||||| || || |||||||| || || || || ||||| || | |||||||||
Sbjct: 29170870 ggagtgaaagacttaatcgtctgcataaacgaaaccggaatgtaacgaagactgacattt 29170811
Query: 931 cccagcacaatgtttatgcagaagacgaaggacattggaaatatcct 977
|||| |||||||| || || || ||||| ||||||||||| |||||
Sbjct: 29170810 cccaagacaatgttgatacaaaacacgaaagacattggaaaaatcct 29170764
Score = 54.0 bits (27), Expect = 6e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 1114 aagatccacttgttcatgatgatgacagtgacgttgaagccccacca 1160
|||||||| |||||||||||||| ||||| ||||| || ||||||||
Sbjct: 7678306 aagatccatttgttcatgatgataacagtaacgttaaaaccccacca 7678260
Score = 46.1 bits (23), Expect = 0.015
Identities = 86/107 (80%)
Strand = Plus / Minus
Query: 691 atggtctttgtagacgtagccaggcagccaaccatggcagcacagaaaccgaaaatgttg 750
||||||||||| || ||||| | || |||| || |||||||||||| || || |||||
Sbjct: 29171136 atggtctttgtggaagtagctaaacatccaaacagggcagcacagaatccaaacatgtta 29171077
Query: 751 aagctaagctctgtcaccgaagtcaggagtattccgccaactatagg 797
|| ||||| || ||||| || ||||| || ||||| ||||| |||||
Sbjct: 29171076 aaactaagttcagtcacagatgtcagaagaattccaccaacaatagg 29171030
Score = 46.1 bits (23), Expect = 0.015
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 652 ctgtcaaacttgtatccatggagtagggactctgccaagatggtctttgtagacgtagc 710
|||||||| ||||||||||| || || || ||||| | |||||||||||||| |||||
Sbjct: 7678959 ctgtcaaatttgtatccatgaagaagagattctgcaagaatggtctttgtagaggtagc 7678901
>gb|BP818022.1|BP818022 BP818022 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-46-L19 5',
mRNA sequence
Length = 387
Score = 63.9 bits (32), Expect = 6e-008
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 1094 acttgaaatccagtttctggaagatccacttgttcatgatgatg 1137
|||| ||||||| ||||||||||||||| |||||||||||||||
Sbjct: 387 acttaaaatccactttctggaagatccatttgttcatgatgatg 344
>emb|BX532864.1| Arabidopsis thaliana T-DNA flanking sequence GK-495E09-019627,
genomic survey sequence
Length = 378
Score = 60.0 bits (30), Expect = 1e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 1114 aagatccacttgttcatgatgatgacagtgacgttgaagccccaccactg 1163
|||||||| ||||||||||||||||| || || ||||| |||||||||||
Sbjct: 355 aagatccatttgttcatgatgatgacggtaacattgaaaccccaccactg 306
>emb|BX532865.1| Arabidopsis thaliana T-DNA flanking sequence GK-495E09-019654,
genomic survey sequence
Length = 381
Score = 60.0 bits (30), Expect = 1e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 1114 aagatccacttgttcatgatgatgacagtgacgttgaagccccaccactg 1163
|||||||| ||||||||||||||||| || || ||||| |||||||||||
Sbjct: 357 aagatccatttgttcatgatgatgacggtaacattgaaaccccaccactg 308
>gb|AC010704.6|AC010704 Arabidopsis thaliana chromosome 1 BAC T5M16 genomic sequence, complete
sequence
Length = 103353
Score = 60.0 bits (30), Expect = 1e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 1114 aagatccacttgttcatgatgatgacagtgacgttgaagccccaccactg 1163
|||||||| ||||||||||||||||| || || ||||| |||||||||||
Sbjct: 76101 aagatccatttgttcatgatgatgacggtaacattgaaaccccaccactg 76052
Score = 58.0 bits (29), Expect = 4e-006
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 421 ttaaggttgcctgcaacgttgaacgtcactgctgttgttgaatggatgacgtagaagatg 480
|||||||| || || |||||||| || ||||| ||||| || || ||||| |||||||||
Sbjct: 77389 ttaaggtttccagccacgttgaatgtgactgcagttgtggagtgaatgacatagaagatg 77330
Query: 481 gagaagttaaggcagaa 497
|||||||| || |||||
Sbjct: 77329 gagaagttgagacagaa 77313
Score = 54.0 bits (27), Expect = 6e-005
Identities = 87/107 (81%)
Strand = Plus / Minus
Query: 871 ggagtgaaagatttgattgtctgcatgaaggagactgggatgtagcgcaagctgacattt 930
||||||||||| || || |||||||| || || || || ||||| || | |||||||||
Sbjct: 76497 ggagtgaaagacttaatcgtctgcataaacgaaaccggaatgtaacgaagactgacattt 76438
Query: 931 cccagcacaatgtttatgcagaagacgaaggacattggaaatatcct 977
|||| |||||||| || || || ||||| ||||||||||| |||||
Sbjct: 76437 cccaagacaatgttgatacaaaacacgaaagacattggaaaaatcct 76391
Score = 46.1 bits (23), Expect = 0.015
Identities = 86/107 (80%)
Strand = Plus / Minus
Query: 691 atggtctttgtagacgtagccaggcagccaaccatggcagcacagaaaccgaaaatgttg 750
||||||||||| || ||||| | || |||| || |||||||||||| || || |||||
Sbjct: 76763 atggtctttgtggaagtagctaaacatccaaacagggcagcacagaatccaaacatgtta 76704
Query: 751 aagctaagctctgtcaccgaagtcaggagtattccgccaactatagg 797
|| ||||| || ||||| || ||||| || ||||| ||||| |||||
Sbjct: 76703 aaactaagttcagtcacagatgtcagaagaattccaccaacaatagg 76657
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 60.0 bits (30), Expect = 1e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 1114 aagatccacttgttcatgatgatgacagtgacgttgaagccccaccactg 1163
|||||||| ||||||||||||||||| || || ||||| |||||||||||
Sbjct: 13406793 aagatccatttgttcatgatgatgacggtaacattgaaaccccaccactg 13406744
Score = 58.0 bits (29), Expect = 4e-006
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 421 ttaaggttgcctgcaacgttgaacgtcactgctgttgttgaatggatgacgtagaagatg 480
|||||||| || || |||||||| || ||||| ||||| || || ||||| |||||||||
Sbjct: 13408081 ttaaggtttccagccacgttgaatgtgactgcagttgtggagtgaatgacatagaagatg 13408022
Query: 481 gagaagttaaggcagaa 497
|||||||| || |||||
Sbjct: 13408021 gagaagttgagacagaa 13408005
Score = 54.0 bits (27), Expect = 6e-005
Identities = 87/107 (81%)
Strand = Plus / Minus
Query: 871 ggagtgaaagatttgattgtctgcatgaaggagactgggatgtagcgcaagctgacattt 930
||||||||||| || || |||||||| || || || || ||||| || | |||||||||
Sbjct: 13407189 ggagtgaaagacttaatcgtctgcataaacgaaaccggaatgtaacgaagactgacattt 13407130
Query: 931 cccagcacaatgtttatgcagaagacgaaggacattggaaatatcct 977
|||| |||||||| || || || ||||| ||||||||||| |||||
Sbjct: 13407129 cccaagacaatgttgatacaaaacacgaaagacattggaaaaatcct 13407083
Score = 46.1 bits (23), Expect = 0.015
Identities = 86/107 (80%)
Strand = Plus / Minus
Query: 691 atggtctttgtagacgtagccaggcagccaaccatggcagcacagaaaccgaaaatgttg 750
||||||||||| || ||||| | || |||| || |||||||||||| || || |||||
Sbjct: 13407455 atggtctttgtggaagtagctaaacatccaaacagggcagcacagaatccaaacatgtta 13407396
Query: 751 aagctaagctctgtcaccgaagtcaggagtattccgccaactatagg 797
|| ||||| || ||||| || ||||| || ||||| ||||| |||||
Sbjct: 13407395 aaactaagttcagtcacagatgtcagaagaattccaccaacaatagg 13407349
>emb|AL082615.1|CNS00O0P Arabidopsis thaliana genome survey sequence SP6 end of BAC F5D10 of
IGF library from strain Columbia of Arabidopsis thaliana,
genomic survey sequence
Length = 335
Score = 54.0 bits (27), Expect = 6e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 1114 aagatccacttgttcatgatgatgacagtgacgttgaagccccacca 1160
|||||||| |||||||||||||| ||||| ||||| || ||||||||
Sbjct: 246 aagatccatttgttcatgatgataacagtaacgttaaaaccccacca 200
>gb|BP858754.1|BP858754 BP858754 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-38-F21 5',
mRNA sequence
Length = 377
Score = 52.0 bits (26), Expect = 2e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 1106 gtttctggaagatccacttgttcatgatgatgac 1139
||||||| |||||||| |||||||||||||||||
Sbjct: 376 gtttctgaaagatccatttgttcatgatgatgac 343
>gb|BX834201.1|BX834201 BX834201 Arabidopsis thaliana Adult vegetative tissue Col-0
Arabidopsis thaliana cDNA clone GSLTLS75ZH01 3PRIM, mRNA
sequence
Length = 662
Score = 50.1 bits (25), Expect = 0.001
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 421 ttaaggttgcctgcaacgttgaacgtcactgctgttgttgaatggatgacgtagaagatg 480
|||||||| || || |||||||| || ||||| |||| || || ||||| |||||||||
Sbjct: 441 ttaaggtttccagccacgttgaatgtgactgcaattgtggagtgaatgacatagaagatg 500
Query: 481 gagaagttaaggcagaa 497
|||||||| || |||||
Sbjct: 501 gagaagttgagacagaa 517
>gb|AV559353.1|AV559353 AV559353 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ115g07F 3', mRNA sequence
Length = 576
Score = 46.1 bits (23), Expect = 0.015
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 421 ttaaggttgcctgcaacgttgaacgtcactgctgttgttgaatggatgacgtagaagatg 480
|||||||| || || |||||||| || ||||| ||||| || || ||||| |||||||||
Sbjct: 514 ttaaggtttccagccacgttgaatgtgactgcagttgtggagtgaatgacatagaagatg 573
Query: 481 gag 483
|||
Sbjct: 574 gag 576
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 578,140
Number of Sequences: 1013581
Number of extensions: 578140
Number of successful extensions: 43899
Number of sequences better than 0.5: 28
Number of HSP's better than 0.5 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42916
Number of HSP's gapped (non-prelim): 960
length of query: 1279
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1259
effective length of database: 888,669,252
effective search space: 1118834588268
effective search space used: 1118834588268
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)